Transcription Factor

Accessions: Q8LFD3 (JASPAR 2024)
Names: ATB23_ARATH, HD-ZIP protein ATHB-23, Homeobox-leucine zipper protein ATHB-23, Homeodomain transcription factor ATHB-23
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 255
Pfam Domains: 71-124 Homeobox domain
126-167 Homeobox associated leucine zipper
Sequence:
(in bold interface residues)
1 MSCNNNGLAFFPENFSLQNHHQEEEDHPQLLQDFHGFLGKRSPMNNVQGFCNLDMNGDEE 60
61 YSDDGSKMGEKKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRR 120
121 ARSKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQAQVMALKSREPIESINLNKETEG 180
181 SCSDRSENISGDIRPPEIDSQFALGHPPTTTTMQFFQNSSSEQRMVKEENSISNMFCGID 240
241 DQSGFWPWLDQQQYN
Interface Residues: 71, 72, 73, 74, 110, 111, 113, 114, 117, 118, 121, 122, 124, 125
3D-footprint Homologues: 3cmy_A, 1puf_B, 1nk2_P, 1b72_A, 2ld5_A, 5hod_A, 1au7_A, 3rkq_B, 5jlw_D, 7xrc_C, 1e3o_C, 1le8_A, 1ig7_A, 7q3o_C, 5flv_I, 2h1k_B, 1jgg_B, 5zjt_E, 4cyc_A, 2lkx_A, 1puf_A, 6wig_A, 3l1p_A, 2hdd_A, 8g87_X, 6a8r_A, 4qtr_D, 2r5y_A, 1fjl_B, 7psx_B, 3lnq_A, 6es3_K, 4xrs_G, 3a01_E, 1zq3_P, 5zfz_A, 1o4x_A, 1du0_A, 2hos_A, 6m3d_C
Binding Motifs: MA1328.1 wwwawthmyTAATyA
MA1327.2 wtAATTAAww
MA1327.3 tAATTAA
Binding Sites: MA1328.1.1
MA1328.1.10
MA1328.1.11
MA1328.1.12
MA1328.1.13
MA1328.1.14
MA1328.1.15 / MA1328.1.20
MA1328.1.16
MA1328.1.17
MA1328.1.18
MA1328.1.19
MA1328.1.2
MA1328.1.3
MA1328.1.4
MA1328.1.5
MA1328.1.6 / MA1328.1.9
MA1328.1.7 / MA1328.1.8
MA1327.2.1
MA1327.2.10 / MA1327.2.12
MA1327.2.11 / MA1327.2.13 / MA1327.2.14 / MA1327.2.15 / MA1327.2.16 / MA1327.2.17
MA1327.2.12 / MA1327.2.14
MA1327.2.10 / MA1327.2.13 / MA1327.2.15 / MA1327.2.8
MA1327.2.16 / MA1327.2.18
MA1327.2.17 / MA1327.2.20
MA1327.2.18
MA1327.2.19
MA1327.2.2 / MA1327.2.6 / MA1327.2.7
MA1327.2.3 / MA1327.2.4
MA1327.2.11 / MA1327.2.4 / MA1327.2.5 / MA1327.2.9
MA1327.2.5 / MA1327.2.6
MA1327.2.7 / MA1327.2.8
MA1327.2.19
MA1327.2.20
MA1327.2.3
MA1327.2.9
MA1327.3.1 / MA1327.3.10 / MA1327.3.11 / MA1327.3.12 / MA1327.3.13 / MA1327.3.15 / MA1327.3.16 / MA1327.3.17 / MA1327.3.18 / MA1327.3.2 / MA1327.3.4 / MA1327.3.5 / MA1327.3.6 / MA1327.3.7 / MA1327.3.8
MA1327.3.14
MA1327.3.19 / MA1327.3.20 / MA1327.3.3
MA1327.3.9
Publications: Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed]
Related annotations: PaperBLAST

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