Transcription Factor
| Accessions: | RVE1 (ArabidopsisPBM 20140210), F4KGY6 (JASPAR 2024), T21141 (AthalianaCistrome v4_May2016) |
| Names: | RVE1, RVE1_ARATH, AT5G17300, T21141; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | MYB (Myb-related), ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB-related |
| Length: | 387 |
| Pfam Domains: | 55-99 Myb-like DNA-binding domain 58-102 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MASSPLTANVQGTNASLRNRDEETADKQIQFNDQSFGGNDYAPKVRKPYTITKERERWTD 60 61 EEHKKFVEALKLYGRAWRRIEEHVGSKTAVQIRSHAQKFFSKVAREATGGDGSSVEPIVI 120 121 PPPRPKRKPAHPYPRKFGNEADQTSRSVSPSERDTQSPTSVLSTVGSEALCSLDSSSPNR 180 181 SLSPVSSASPPAALTTTANAPEELETLKLELFPSERLLNRESSIKEPTKQSLKLFGKTVL 240 241 VSDSGMSSSLTTSTYCKSPIQPLPRKLSSSKTLPIIRNSQEELLSCWIQVPLKQEDVENR 300 301 CLDSGKAVQNEGSSTGSNTGSVDDTGHTEKTTEPETMLCQWEFKPSERSAFSELRRTNSE 360 361 SNSRGFGPYKKRKMVTEEEEHEIHLHL |
| Interface Residues: | 55, 89, 90, 93, 94, 97, 98 |
| 3D-footprint Homologues: | 6j5b_C, 6qec_A, 7d3t_D, 1mse_C, 3osg_A |
| Binding Motifs: | RVE1 aAAATATCTk RVE1_2 smatATCwaw M0581 / MA1184.1 aaawAAATATCTwa M0594 aGATATTTtt MA1184.2 wAAATATCT |
| Binding Sites: | MA1184.1.1 MA1184.1.10 MA1184.1.11 MA1184.1.12 MA1184.1.13 MA1184.1.14 MA1184.1.15 MA1184.1.16 MA1184.1.17 MA1184.1.18 MA1184.1.19 MA1184.1.2 MA1184.1.20 MA1184.1.3 MA1184.1.4 MA1184.1.5 MA1184.1.6 MA1184.1.7 MA1184.1.8 MA1184.1.9 MA1184.2.1 MA1184.2.10 MA1184.2.11 MA1184.2.12 MA1184.2.13 MA1184.2.14 MA1184.2.15 MA1184.2.16 MA1184.2.17 MA1184.2.18 MA1184.2.19 MA1184.2.2 MA1184.2.20 MA1184.2.3 MA1184.2.4 MA1184.2.5 MA1184.2.6 MA1184.2.7 MA1184.2.8 MA1184.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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