Transcription Factor
| Accessions: | T075521_1.02 (CISBP 1.02), Q93ZL5 (JASPAR 2024) |
| Names: | CDF2, T075521_1.02;, AtDOF5.2, CDF2_ARATH, Cyclic dof factor 2, Dof zinc finger protein DOF5.2 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:Dof |
| Length: | 457 |
| Pfam Domains: | 134-193 Dof domain, zinc finger |
| Sequence: (in bold interface residues) | 1 MADPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLGR 60 61 EEGDDVGDGGGESETDKKEEKDSECQEESLRNESNDVTTTTSGITEKTETTKAAKTNEES 120 121 GGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRN 180 181 VPVGAGRRKNKSPASHYNRHVSITSAEAMQKVARTDLQHPNGANLLTFGSDSVLCESMAS 240 241 GLNLVEKSLLKTQTVLQEPNEGLKITVPLNQTNEEAGTVSPLPKVPCFPGPPPTWPYAWN 300 301 GVSWTILPFYPPPAYWSCPGVSPGAWNSFTWMPQPNSPSGSNPNSPTLGKHSRDENAAEP 360 361 GTAFDETESLGREKSKPERCLWVPKTLRIDDPEEAAKSSIWETLGIKKDENADTFGAFRS 420 421 STKEKSSLSEGRLPGRRPELQANPAALSRSANFHESS |
| Interface Residues: | 146, 149, 152, 174, 176, 177 |
| 3D-footprint Homologues: | 6e94_A |
| Binding Motifs: | M0653_1.02 maWAAAGyrh MA0973.1 maWAAAGyrh MA0973.2 aWAAAGy |
| Publications: | Iratni R, Baeza L, Andreeva A, Mache R, Lerbs-Mache S. Regulation of rDNA transcription in chloroplasts: promoter exclusion by constitutive repression. Genes Dev 8:2928-38 (1994). [Pubmed] |
| Related annotations: | PaperBLAST |
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