Transcription Factor
| Accessions: | ABI5 (Athamap 20091028), T023840_1.02 (CISBP 1.02), Q9SJN0 (JASPAR 2024), T10092 (AthalianaCistrome v4_May2016) |
| Names: | ABI5, AtbZIP39, AtDPBF1, bZIP transcription factor 39, Dc3 promoter-binding factor 1, DPBF1, EEL, GIA1, Protein ABSCISIC ACID-INSENSITIVE 5, Protein GROWTH-INSENSITIVITY TO ABA 1, T023840_1.02;, ABI5_ARATH, AT2G36270, T10092; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | Athamap 20091028 1, CISBP 1.02 2, JASPAR 2024 3, AthalianaCistrome v4_May2016 4 1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed] 2 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 4 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:bZIP, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq |
| Length: | 442 |
| Pfam Domains: | 356-406 Basic region leucine zipper 357-405 bZIP transcription factor |
| Sequence: (in bold interface residues) | 1 MVTRETKLTSEREVESSMAQARHNGGGGGENHPFTSLGRQSSIYSLTLDEFQHALCENGK 60 61 NFGSMNMDEFLVSIWNAEENNNNQQQAAAAAGSHSVPANHNGFNNNNNNGGEGGVGVFSG 120 121 GSRGNEDANNKRGIANESSLPRQGSLTLPAPLCRKTVDEVWSEIHRGGGSGNGGDSNGRS 180 181 SSSNGQNNAQNGGETAARQPTFGEMTLEDFLVKAGVVREHPTNPKPNPNPNQNQNPSSVI 240 241 PAAAQQQLYGVFQGTGDPSFPGQAMGVGDPSGYAKRTGGGGYQQAPPVQAGVCYGGGVGF 300 301 GAGGQQMGMVGPLSPVSSDGLGHGQVDNIGGQYGVDMGGLRGRKRVVDGPVEKVVERRQR 360 361 RMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLKHALAELERKRKQQYFESLKSRA 420 421 QPKLPKSNGRLRTLMRNPSCPL |
| Interface Residues: | 361, 364, 365, 366, 368, 369, 372, 373 |
| 3D-footprint Homologues: | 1gd2_G, 4eot_A, 7x5e_F, 2wt7_A, 2wt7_B, 7x5e_E, 2dgc_A, 5t01_B, 5vpe_C, 1dh3_C |
| Binding Motifs: | ABI5 KMyACGTbR M0261_1.02 bgmCACGTGk MA0931.1 bgmCACGTGk M0201 wdrwgrwsACGTGKCarw M0204 rrwGrwsACGTGGCa MA0931.2 gmCACGTG |
| Binding Sites: | ABI5_1 ABI5_2 ABI5_3 ABI5_4 MA0931.1.1 MA0931.1.10 MA0931.1.11 MA0931.1.12 MA0931.1.13 MA0931.1.14 MA0931.1.15 MA0931.1.16 MA0931.1.17 MA0931.1.18 MA0931.1.19 MA0931.1.2 MA0931.1.20 MA0931.1.3 MA0931.1.4 MA0931.1.5 MA0931.1.6 MA0931.1.7 MA0931.1.8 MA0931.1.9 MA0931.2.1 MA0931.2.10 MA0931.2.11 MA0931.2.12 MA0931.2.13 MA0931.2.14 MA0931.2.15 MA0931.2.16 MA0931.2.17 MA0931.2.18 MA0931.2.19 MA0931.2.2 MA0931.2.20 MA0931.2.3 MA0931.2.4 MA0931.2.5 MA0931.2.6 MA0931.2.7 MA0931.2.8 MA0931.2.9 |
| Publications: | Bensmihen S., Rippa S., Lambert G., Jublot D., Pautot V., Granier F., Giraudat J., Parcy F. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis.. Plant Cell 14:1391-1403 (2002). [Pubmed] Carles C, Bies-Etheve N, Aspart L, Leon-Kloosterziel KM, Koornneef M, Echeverria M, Delseny M. 2002. Regulation of Arabidopsis thaliana Em genes: role of ABI5. : Plant J. 30:373-83. [Pubmed] Kim S. Y., Ma J., Perret P., Li Z., Thomas T. L. Arabidopsis ABI5 subfamily members have distinct DNA-binding and transcriptional activities.. Plant Physiol. 130:688-697 (2002). [Pubmed] |
| Related annotations: | PaperBLAST |
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