Transcription Factor
| Accessions: | UP00228A (UniPROBE 20160601) |
| Names: | bagpipe homeobox gene 1 homolog (Drosophila), Bagpipe homeobox protein homolog 1, Bapx1, Homeobox protein Nkx-3.2, Nkx3-2, NKX3.2, Nkx3b |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P97503 |
| Description: | bagpipe homeobox gene 1 homolog (Drosophila) |
| Length: | 93 |
| Pfam Domains: | 17-73 Homeobox domain |
| Sequence: (in bold interface residues) | 1 GGVEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQV 60 61 KIWFQNRRYKTKRRQMAADLLASAPAAKKVAVK |
| Interface Residues: | 17, 18, 19, 20, 58, 59, 61, 62, 65, 66, 69, 70, 73, 74, 75 |
| 3D-footprint Homologues: | 2h1k_B, 1puf_A, 6a8r_A, 3cmy_A, 1fjl_B, 5zfz_A, 1zq3_P, 3lnq_A, 2lkx_A, 1jgg_B, 6m3d_C, 3d1n_M, 2ld5_A, 7q3o_C, 6es3_K, 1nk2_P, 1b72_A, 5flv_I, 3l1p_A, 1ig7_A, 5zjt_E, 3a01_E, 5hod_A, 2hdd_A, 5jlw_D, 3rkq_B, 2r5y_A, 4xrs_G, 2hos_A, 7psx_B, 4cyc_A, 1le8_A, 4j19_B, 7xrc_C, 1e3o_C, 1au7_A, 2xsd_C, 6fqp_B, 1o4x_A, 1le8_B, 6fqq_E, 1du0_A, 4qtr_D, 1mnm_C, 1puf_B, 8g87_X, 1k61_B |
| Binding Motifs: | UP00228A_1 mwtawSCACTTAavmay |
| Binding Sites: | AAGTACTT ACCACTTA ACTAAGTG ACTTAAGT AGCACTTA AGTACTTA ATAAGTGG ATTAAGTG CACTTAAA CACTTAAC CACTTAAG CCACTTAC CCACTTAG CCCACTTA GCACTTAA GCCACTTA GGCACTTA GGTACTTA GTACTTAA TAAGTGGA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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