Transcription Factor
| Accessions: | UP00557A (UniPROBE 20160601), Q9SGJ6 (JASPAR 2024), T05451 (AthalianaCistrome v4_May2016) |
| Names: | DDF2, DREB1E, DWARF AND DELAYED FLOWERING2, Dehydration-responsive element-binding protein 1E, DRE1E_ARATH, Protein DREB1E, AT1G63030, T05451; |
| Organisms: | Arabidopsis lyrata, Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Uniprot: | Q9SGJ6 |
| Description: | DWARF AND DELAYED FLOWERING2: Orthologous to Arabidopsis thaliana DDF2 |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 181 |
| Pfam Domains: | 29-78 AP2 domain |
| Sequence: (in bold interface residues) | 1 MENDDITVAEMKPKKRAGRRIFKETRHPIYRGVRRRDGDKWVCEVREPIHQRRVWLGTYP 60 61 TADMAARAHDVAVLALRGRSACLNFSDSAWRLPVPASTDPDTIRRTAAEAAEMFRPPEFS 120 121 TGITVLPSASEFDTSDEGVAGMMMRLAEEPLMSPPRSYIDMNTSVYVDEEMCYEDLSLWS 180 181 Y |
| Interface Residues: | 16, 34, 36, 37, 38, 39, 41, 44, 46, 50, 52, 53, 55 |
| 3D-footprint Homologues: | 5wx9_A, 7wq5_A, 1gcc_A, 7et4_D |
| Binding Motifs: | UP00557A_1 kkkrvtsATGTCGrCraggrth UP00557A_2 gkbrmwrATGTCGRCvmkgaty UP00557A_3 tsdrgysATGTCGrCrasgkmr UP00557A_4 kkkgsysATGTCGrYrakrwtm UP00557A_5 dkykcwrATGTCGrYrrkrmth UP00557A_6 tskrgysATGTCGrCrasgkwr MA0978.1 ATGTCGGC M0129 ygATGTCGrCrrmrr |
| Binding Sites: | AATGTCGG ACCGACAT AGCCGACA ATGTCGAC ATGTCGGC CACCGACA CATGTCGG CCGACATA CCGACATC CGCCGACA CGTCGACA CTGCCGAC GCCGACAC GGCCGACA GGTCGACA GTCGACAC GTCGGCAA TACCGACA TGCCGACA TGTCGACA |
| Publications: | Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). [Pubmed] Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K. The DDF1 transcriptional activator upregulates expression of a gibberellin-deactivating gene, GA2ox7, under high-salinity stress in Arabidopsis. Plant J 56:613-26 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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