Transcription Factor

Accessions: T002795_1.02 (CISBP 1.02), A9S898 (JASPAR 2018)
Names: estExt_gwp_gw1.C_550163, T002795_1.02;, A9S898_PHYPA
Organisms: Physcomitrella patens, moss
Libraries: CISBP 1.02 1, JASPAR 2018 2
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 [Pubmed]
Notes: experiment type:PBM, family:AP2
Length: 261
Pfam Domains: 47-96 AP2 domain
Sequence:
(in bold interface residues)
1 MVEKVVVSSLRVKRGGNLLAPLKRNVSSIAKKSSTPKSGKPVGSPKVYKGVRMRTWGKWV 60
61 SEIREPNKRSRIWLGSFPTAEMAAKAYDAAAVCLRGRSVKLNFPDSPPRCAARCNSPREV 120
121 QAAATAAAVACIPSATALTVANFQSPAQTLESSPLHSSPSSSDMSSGDEDSGEDSVQSFV 180
181 AEGSQISPSEVVPVLEWVKVEFGDKETVAAGDVDFDCDYSFISEFAADSLLACSYNSKGR 240
241 TEYLPIETHDAALYDSTLWFF
Interface Residues: 52, 54, 56, 62, 64, 71, 73
3D-footprint Homologues: 1gcc_A
Binding Motifs: M0073_1.02 wkGTCGGTGr
MA1008.1 wkGTCGGTGr
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]

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