Transcription Factor
| Accessions: | MYOD1_MOUSE (HOCOMOCO 10), P10085 (JASPAR 2024) |
| Names: | MYOD1_MOUSE |
| Organisms: | Mus musculus |
| Libraries: | HOCOMOCO 10 1, JASPAR 2024 2 1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | P10085 |
| Length: | 318 |
| Pfam Domains: | 22-109 Myogenic Basic domain 110-161 Helix-loop-helix DNA-binding domain 190-258 Myogenic determination factor 5 |
| Sequence: (in bold interface residues) | 1 MELLSPPLRDIDLTGPDGSLCSFETADDFYDDPCFDSPDLRFFEDLDPRLVHMGALLKPE 60 61 EHAHFPTAVHPGPGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERR 120 121 RLSKVNEAFETLKRCTSSNPNQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAFYAP 180 181 GPLPPGRGSEHYSGDSDASSPRSNCSDGMMDYSGPPSGPRRQNGYDTAYYSEAARESRPG 240 241 KSAAVSSLDCLSSIVERISTDSPAAPALLLADAPPESPPGPPEGASLSDTEQGTQTPSPD 300 301 AAPQCPAGSNPNAIYQVL |
| Interface Residues: | 111, 114, 115, 117, 118, 119, 121, 122 |
| 3D-footprint Homologues: | 2ypa_A, 7z5k_B, 5eyo_A, 5i50_B, 6od3_F, 1am9_A, 2ql2_D, 2ypa_B, 2ql2_A |
| Binding Motifs: | MA0499.1 wsCASCTGyycyy MYOD1_MOUSE.H10MO.C|M01221 sCAGCTGyyscysyc |
| Binding Sites: | MA0499.1.1 MA0499.1.10 MA0499.1.11 MA0499.1.12 MA0499.1.13 MA0499.1.14 MA0499.1.15 MA0499.1.16 MA0499.1.17 MA0499.1.18 MA0499.1.19 MA0499.1.2 MA0499.1.20 MA0499.1.3 MA0499.1.4 MA0499.1.5 MA0499.1.6 MA0499.1.7 MA0499.1.8 MA0499.1.9 |
| Publications: | Cao Y, Yao Z, Sarkar D, Lawrence M, Sanchez G.J, Parker M.H, MacQuarrie K.L, Davison J, Morgan M.T, Ruzzo W.L, Gentleman R.C, Tapscott S.J. Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming. Developmental cell 18:662-74 (2010). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.