Transcription Factor
| Accessions: | Q8BZD0 (JASPAR 2024) |
| Names: | Fragment, Homeobox domain-containing protein, Q8BZD0_MOUSE, Uncharacterized protein |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 245 |
| Pfam Domains: | 97-151 Homeobox domain |
| Sequence: (in bold interface residues) | 1 LPASPVPLKLCPAGPFGVRWAFQMPPGRAPGERDSAFQPSAPVPSKPFLLSAPPFYSACC 60 61 GGSCRRPASPTAFSREEHGLPLLTQDSNSKARRGILRRAVFSEEQRKALEKMFQKQKYIS 120 121 KTDRRKLAVSLGLKESQVKIWFQNRRMKWRNSKEKEVLSSRCLQEVSLQEDRLARPAVGC 180 181 PPQCPSIWEVSQPHSSPSWREETPESAERLTQENSGVLEADSLRGTLYLCPEKGPRDKHG 240 241 LQSTI |
| Interface Residues: | 95, 97, 98, 100, 136, 137, 139, 140, 143, 144, 147, 148, 149, 150, 151, 156 |
| 3D-footprint Homologues: | 5zfz_A, 1puf_A, 2ld5_A, 1mnm_C, 1puf_B, 1jgg_B, 6es3_K, 4xrs_G, 3cmy_A, 2hdd_A, 1nk2_P, 3rkq_B, 2r5y_A, 6m3d_C, 1au7_A, 5flv_I, 3d1n_M, 2hos_A, 1fjl_B, 4cyc_A, 2d5v_B, 1b72_A, 5hod_A, 3l1p_A, 6a8r_A, 3a01_E, 2h1k_B, 7q3o_C, 5jlw_D, 3lnq_A, 2lkx_A, 7xrc_C, 1e3o_C, 2xsd_C, 1le8_A, 1ig7_A, 1zq3_P, 1k61_B, 1o4x_A, 8g87_X, 5zjt_E, 7psx_B, 4qtr_D, 1du0_A |
| Binding Motifs: | PH0019.1 bktmAtTAATkAakwm |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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