Transcription Factor
| Accessions: | T019016_1.02 (CISBP 1.02), A9TDF9 (JASPAR 2024) |
| Names: | e_gw1.209.40.1, T019016_1.02;, A9TDF9_PHYPA |
| Organisms: | Physcomitrella patens, moss |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:bHLH |
| Length: | 233 |
| Pfam Domains: | 43-88 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSTGSAQGSGYANPGGVPSGQPLPGIGARPRVRARRGQATDPHSIAERLRRERIAERMKA 60 61 LQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAGALPSLVNNDLPSEGANT 120 121 FAASAGSSGIPNPAQDGLALTERQVTRMMEDDMGSAMQYLQSKGLCLMPISLATAISTTG 180 181 KGSAQATANAGERLGSAAAANTGKSVTDPSSAGGSKEDGSETARVTECATQGT |
| Interface Residues: | 38, 43, 44, 46, 47, 50, 51, 71, 73 |
| 3D-footprint Homologues: | 1an4_A, 5eyo_A, 7f2f_B, 5gnj_I, 7ssa_L, 4h10_A, 6g1l_A, 1a0a_B, 7d8t_A, 1am9_A, 8osl_P, 8osl_O, 4h10_B |
| Binding Motifs: | M0250_1.02 ygCACGTGcr MA0988.1 hgCACGTGcd MA0988.2 CACGTG |
| Publications: | Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
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