Transcription Factor

Accessions: T019016_1.02 (CISBP 1.02), A9TDF9 (JASPAR 2018)
Names: e_gw1.209.40.1, T019016_1.02;, A9TDF9_PHYPA
Organisms: Physcomitrella patens, moss
Libraries: CISBP 1.02 1, JASPAR 2018 2
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 [Pubmed]
Notes: experiment type:PBM, family:bHLH
Length: 233
Pfam Domains: 43-88 Helix-loop-helix DNA-binding domain
Sequence:
(in bold interface residues)
1 MSTGSAQGSGYANPGGVPSGQPLPGIGARPRVRARRGQATDPHSIAERLRRERIAERMKA 60
61 LQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAGALPSLVNNDLPSEGANT 120
121 FAASAGSSGIPNPAQDGLALTERQVTRMMEDDMGSAMQYLQSKGLCLMPISLATAISTTG 180
181 KGSAQATANAGERLGSAAAANTGKSVTDPSSAGGSKEDGSETARVTECATQGT
Interface Residues: 38, 43, 44, 46, 47, 50, 51, 71
3D-footprint Homologues: 1an4_A, 4h10_A, 1hlo_B, 1a0a_B, 1nkp_E, 5gnj_I, 1am9_A, 4ati_B, 4h10_B
Binding Motifs: M0250_1.02 ygCACGTGcr
MA0988.1 hgCACGTGcd
Publications: Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.