Transcription Factor
| Accessions: | Rel (DrosophilaTF 1.1) |
| Names: | NFKB1_DROME, Nuclear factor NF-kappa-B p110 subunit, Rel-p110, Rel-p49, Rel-p68, Relish protein |
| Organisms: | Drosophila melanogaster |
| Libraries: | DrosophilaTF 1.1 1 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] |
| Uniprot: | Q9452 |
| Length: | 971 |
| Pfam Domains: | 152-334 Rel homology domain (RHD) 635-695 Ankyrin repeats (3 copies) 640-672 Ankyrin repeat 642-691 Ankyrin repeats (many copies) 674-695 Ankyrin repeat 710-733 Ankyrin repeat 710-733 Ankyrin repeat 711-768 Ankyrin repeats (3 copies) 711-762 Ankyrin repeats (many copies) |
| Sequence: (in bold interface residues) | 1 MNMNQYYDLDNGKNVMFMNDASSTSGYSSSTSPNSTNRSFSPAHSPKTMELQTDFANLNL 60 61 PGGNSPHQPPMANSPYQNQLLNNGGICQLGATNLINSTGVSFGVANVTSFGNMYMDHQYF 120 121 VPAPATVPPSQNFGYHQNGLASDGDIKHVPQLRIVEQPVEKFRFRYKSEMHGTHGSLNGA 180 181 NSKRTPKTFPEVTLCNYDGPAVIRCSLFQTNLDSPHSHQLVVRKDDRDVCDPHDLHVSKE 240 241 RGYVAQFINMGIIHTAKKYIFEELCKKKQDRLVFQMNRRELSHKQLQELHQETEREAKDM 300 301 NLNQVRLCFEAFKIEDNGAWVPLAPPVYSNAINNRKSAQTGELRIVRLSKPTGGVMGNDE 360 361 LILLVEKVSKKNIKVRFFEEDEDGETVWEAYAKFRESDVHHQYAIVCQTPPYKDKDVDRE 420 421 VNVYIELIRPSDDERSFPALPFRYKPRSVIVSRKRRRTGSSANSSSSGTESSNNSLDLPK 480 481 TLGLAQPPNGLPNLSQHDQTISEEFGREKHLNEFIASEDFRKLIEHNSSDLEKICQLDMG 540 541 ELQHDGHNRAEVPSHRNRTIKCLDDLFEIYKQDRISPIKISHHKVEKWFIEHALNNYNRD 600 601 TLLHEVISHKKDKLKLAIQTIQVMNYFNLKDVVNSTLNADGDSALHVACQQDRAHYIRPL 660 661 LGMGCNPNLKNNAGNTPLHVAVKEEHLSCVESFLNGVPTVQLDLSLTNDDGLTPLHMAIR 720 721 QNKYDVAKKLISYDRTSISVANTMDGNNALHMAVLEQSVELLVLILDAQNENLTDILQAQ 780 781 NAAGHTPLELAERKANDRVVQLLKNVYPEKGELAMTWIPCKVKEEIDSSSDESSDAGQLE 840 841 IKSEEMDIETKDEDSVELDLSSGPRRQKDESSRDTEMDNNKLQLLLKNKFIYDRLCSLLN 900 901 QPLGHGSDPQDRKWMQLARQTHLKQFAFIWLGAEDLLDHVKRKGASVEFSTFARALQAVD 960 961 PQAYALLVNPT |
| Interface Residues: | 163, 165, 166, 168, 169, 171, 173, 174, 335, 336, 338, 367, 401, 409, 412, 432, 433 |
| 3D-footprint Homologues: | 1gji_A, 2o61_A, 1imh_C, 2ram_A, 1nfk_A, 7cli_B, 1a3q_A, 1p7h_L, 7vru_B |
| Binding Motifs: | Rel GGGGAwtCmCc |
| Binding Sites: | Rel_1 Rel_10 Rel_11 Rel_12 Rel_13 Rel_14 Rel_15 Rel_16 Rel_17 Rel_18 Rel_19 Rel_2 Rel_20 Rel_21 Rel_22 Rel_23 Rel_24 Rel_25 Rel_26 Rel_27 Rel_28 Rel_29 Rel_3 Rel_30 Rel_31 Rel_4 Rel_5 Rel_6 Rel_7 Rel_8 Rel_9 |
| Publications: | Senger K, Armstrong G.W, Rowell W.J, Kwan J.M, Markstein M, Levine M. Immunity regulatory DNAs share common organizational features in Drosophila. Molecular cell 13:19-32 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.