Transcription Factor
| Accessions: | Q700D7 (JASPAR 2024), T18454 (AthalianaCistrome v4_May2016) |
| Names: | At4g12670, Homeodomain-like superfamily protein, MYB transcription factor, Q700D7_ARATH, T18454; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB-related |
| Length: | 499 |
| Sequence: (in bold interface residues) | 1 MLTDKSRKGCRESLGGVDVGLMMEKEAGGVENVVEVNVSGASGMVSGKRREGDGLNNKWI 60 61 VIEKSQKMQKVAAETHSRENSKADDIDSDKGRKQRGRFNEKNYEISYACISNAGEGRKGR 120 121 VRRGNEKNHQAPEAHSIDVGGERKRQRRCDDINHEKAQPHSFAVGIKTKEKRRYSEKNQQ 180 181 NKTVATTHEHDVLTNDGRTEARDSDFGEGRSGQGCFHENNQQTKVSSTERCEQEIPRTNK 240 241 RVSLGSGLGEGRYREGRHIEKNQHTETVKTETHGKEVSKDRKRKRERGVERDGDEFYLAE 300 301 NQDRQCQADMRNDDVAFNKQATGFSTVEQVERKSVSSISSPESTNNVNDPNVAFQELALI 360 361 IHPKAGVQEQPIEARPLRSVSSKKPSFQPEKYGHKSYLEKNGPASNDPAQSATKRKRRFW 420 421 TLAEVEMLRVGVQKFPGERNIPWRKILQFGRDVFHDERAPSDLKDKWKTLNKIPSDTGKW 480 481 VSLSTERQPNYYVSEVSSE |
| Interface Residues: | 415, 417, 460, 461, 464, 465, 468, 469 |
| 3D-footprint Homologues: | 1vfc_A, 1w0t_A, 7c4r_A, 2qhb_A |
| Binding Motifs: | M0622 / MA1354.1 CTAAACCCTAAACCCTAAACcCTAAACCC M0623 mCTAAAYCmTAMACmYKAAAy |
| Publications: | Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.