Transcription Factor

Accessions: UP00571A (UniPROBE 20160601)
Names: ANAC055, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55, At3g15500, ATAF-like NAC-domain transcription factor, AtNAC3, MJK13.16, NAC domain-containing protein 3, NAC domain-containing protein 55, NAC-DOMAIN ENCODING GENE
Organisms: Arabidopsis thaliana
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Description: ATAF-like NAC-domain transcription factor: Transcription factors that bind specifically to the 5'-CATGTG-3' motif
Length: 171
Pfam Domains: 14-139 No apical meristem (NAM) protein
Sequence:
(in bold interface residues)
1 MGLQELDPLAQLSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLP 60
61 SKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRRVGIKKALVFY 120
121 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQTSAQKQAY
Interface Residues: 13, 14, 15, 16, 18, 19, 80, 85, 87, 96, 98, 100, 120, 124, 125, 126, 129
3D-footprint Homologues: 7amn_A, 7xp3_B, 3swp_A
Binding Motifs: UP00571A_1 vyaCACGgmAcyr
UP00571A_2 skwYACGGmAcTt
Binding Sites: ACGGAACC
ATACGTAA
ATTCCGTG
CACGGCAC
GTTACGTA
TTACGTAA
AACGAGAA
ACACGCAA
ACACGGAA
ACACGGCA
ACACGTAA
ACGAGAAA
ACGGAACA
CACGCAAC
CACGGAAC
CACGTAAC
GCACGGAA
GCACGGCA
GTTCCGTA
TACGAGAA
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]
Related annotations: PaperBLAST

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