Transcription Factor

Accessions: WOX13 (ArabidopsisPBM 20140210), T090250_1.02 (CISBP 1.02), O81788 (JASPAR 2024)
Names: ATWOX13, HB-4, WOX13, T090250_1.02;, WOX13_ARATH
Organisms: Arabidopsis thaliana
Libraries: ArabidopsisPBM 20140210 1, CISBP 1.02 2, JASPAR 2024 3
1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed]
2 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HD (WUS-like), experiment type:PBM, family:Homeodomain
Length: 268
Pfam Domains: 97-157 Homeobox domain
Sequence:
(in bold interface residues)
1 MMEWDNQLQPNNHHSSNLQGIDVNGGSGAGGGMYVKVMTDEQYETLRKQIAIYGTICERL 60
61 VEMHKTLTAQQDLAGGRMGGLYADPMMSSLGHKMTARQRWTPTPVQLQILERIFDQGTGT 120
121 PSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQHGGGSSGNNNGESEVETEVEA 180
181 LNEKRVVRPESLLGLPDGNSNNNGLGTTTATTTAPRPEDLCFQSPEISSDLHLLDVLSNP 240
241 RDEHLVGKMGLAESYNLYDHVEDYGMSG
Interface Residues: 97, 99, 100, 142, 143, 145, 146, 149, 150, 153, 154, 157
3D-footprint Homologues: 2lkx_A, 3lnq_A, 1zq3_P, 1nk2_P, 1ig7_A, 2ld5_A, 6ryd_F, 3cmy_A, 2h8r_B, 1au7_A, 1fjl_B, 6wig_A, 5hod_A, 6a8r_A, 2r5y_A, 1ic8_B, 5jlw_D, 3a01_E, 2h1k_B, 4cyc_A, 1e3o_C, 7xrc_C, 4j19_B, 1le8_A, 7q3o_C, 1puf_A, 5flv_I, 1jgg_B, 5zjt_E, 1puf_B, 2hdd_A, 8g87_X, 1b72_A, 4qtr_D, 7psx_B, 3rkq_B, 1du0_A, 6es3_K, 4xrs_G, 5zfz_A, 2hos_A
Binding Motifs: WOX13 wrTCAATCAa
WOX13_2 tttAATTaam
M0853_1.02 TCAATCAa
UN0414.1 tTGATTGA
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.