Transcription Factor
| Accessions: | T023821_1.02 (CISBP 1.02), Q9M7Q5 (JASPAR 2024) |
| Names: | ABF1, T023821_1.02;, ABRE-binding factor 1, Abscisic acid responsive elements-binding factor 1, ABSCISIC ACID-INSENSITIVE 5-like protein 4, AI5L4_ARATH, AtbZIP35, bZIP transcription factor 35 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:bZIP |
| Length: | 392 |
| Pfam Domains: | 312-359 Basic region leucine zipper 313-364 bZIP transcription factor |
| Sequence: (in bold interface residues) | 1 MGTHIDINNLGGDTSRGNESKPLARQSSLYSLTFDELQSTLGEPGKDFGSMNMDELLKNI 60 61 WTAEDTQAFMTTTSSVAAPGPSGFVPGGNGLQRQGSLTLPRTLSQKTVDEVWKYLNSKEG 120 121 SNGNTGTDALERQQTLGEMTLEDFLLRAGVVKEDNTQQNENSSSGFYANNGAAGLEFGFG 180 181 QPNQNSISFNGNNSSMIMNQAPGLGLKVGGTMQQQQQPHQQQLQQPHQRLPPTIFPKQAN 240 241 VTFAAPVNMVNRGLFETSADGPANSNMGGAGGTVTATSPGTSSAENNTWSSPVPYVFGRG 300 301 RRSNTGLEKVVERRQKRMIKNRESAARSRARKQAYTLELEAEIESLKLVNQDLQKKQAEI 360 361 MKTHNSELKEFSKQPPLLAKRQCLRRTLTGPW |
| Interface Residues: | 297, 298, 301, 302, 317, 321, 322, 324, 325, 328, 329 |
| 3D-footprint Homologues: | 5i50_B, 2wt7_A, 7x5e_F, 1dh3_C, 5t01_B, 2dgc_A, 5vpe_C |
| Binding Motifs: | MA0570.1 GgmCACGTGGCmcrvvvgr M0257_1.02 graCACGTGkb MA0570.2 aCACGTGkCAww MA0570.3 aCACGTGkCA |
| Binding Sites: | MA0570.2.1 MA0570.2.10 MA0570.2.11 MA0570.2.12 / MA0570.2.6 MA0570.2.13 / MA0570.2.7 MA0570.2.14 / MA0570.2.8 MA0570.2.15 MA0570.2.16 MA0570.2.17 / MA0570.2.9 MA0570.2.18 MA0570.2.19 MA0570.2.2 MA0570.2.20 MA0570.2.1 / MA0570.2.3 MA0570.2.2 / MA0570.2.4 MA0570.2.5 MA0570.2.3 / MA0570.2.6 MA0570.2.7 MA0570.2.4 / MA0570.2.8 MA0570.2.5 / MA0570.2.9 MA0570.2.10 MA0570.2.11 MA0570.2.12 MA0570.2.13 MA0570.2.14 MA0570.2.15 MA0570.2.16 MA0570.2.17 MA0570.2.18 MA0570.2.19 MA0570.2.20 MA0570.3.1 / MA0570.3.10 / MA0570.3.15 / MA0570.3.2 / MA0570.3.20 / MA0570.3.3 MA0570.3.11 MA0570.3.12 MA0570.3.13 MA0570.3.14 MA0570.3.16 MA0570.3.17 MA0570.3.18 MA0570.3.19 MA0570.3.4 MA0570.3.5 MA0570.3.6 MA0570.3.7 MA0570.3.8 MA0570.3.9 |
| Publications: | Choi H., Hong J., Ha J., Kang J., Kim S. Y. ABFs, a family of ABA-responsive element binding factors. J. Biol. Chem. 275:1723-1730 (2000). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.