Transcription Factor

Accessions: 1vtl_E (3D-footprint 20231221)
Names: AtTBP1, TATA sequence-binding protein 1, TATA-binding factor 1, TATA-box factor 1, TATA-box-binding protein 1, TBP-1, TBP1_ARATH, Transcription initiation factor TFIID TBP-1 subunit
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: P28147
Length: 186
Pfam Domains: 11-93 Transcription factor TFIID (or TATA-binding protein, TBP)
98-184 Transcription factor TFIID (or TATA-binding protein, TBP)
Sequence:
(in bold interface residues)
1 DLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTAL 60
61 IFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEG 120
121 LAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVL 180
181 SEFRKI
Interface Residues: 15, 17, 45, 46, 60, 62, 68, 70, 104, 105, 107, 136, 137, 151, 153, 159, 161
3D-footprint Homologues: 5n9g_G, 1ytb_A, 5oqj_O, 1ais_A, 4wzs_D, 6cnb_R, 1cdw_A, 5iy6_P, 7z7n_D, 1qna_B
Binding Motifs: 1vtl_E TATAAaAg
Binding Sites: 1vtl_A
1vtl_B
Publications: Kim J.L, Nikolov D.B, Burley S.K. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365:520-7 (1993). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.