Transcription Factor
Accessions: | T084285_1.02 (CISBP 1.02), Q6DBP8 (JASPAR 2024), T03654 (AthalianaCistrome v4_May2016) |
Names: | GATA11, T084285_1.02;, GAT11_ARATH, AT1G08010, T03654; |
Organisms: | Arabidopsis thaliana |
Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Notes: | experiment type:PBM, family:GATA, ecotype:Col-0, experiment type: DAP-seq, family:C2C2-GATA |
Length: | 303 |
Pfam Domains: | 222-256 GATA zinc finger |
Sequence: (in bold interface residues) | 1 MNWLPEAEAEDDFKGLLSGDFFDDLINHLDVPLDDIDTTNGEGDWVDRFQDLEPPPMDMF 60 61 PTLPSDLTSCGSGMAKAPRVDIQRNIPALKQSYSSEALSSTLHQSSAPPEIKVSKLFQSL 120 121 SPVSVLENSYGSLSTHNNGSQRLAFPVKGMRSKRKRPTTLRLSYLFPSEPRKPEKSTPGK 180 181 PESECYFSSEQHAKKKRKIHLTTRTVSSTLEASNSDGIVRKCTHCETTKTPQWREGPSGP 240 241 KTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMRRKDDEQFDSSMIRAVI 300 301 SRG |
Interface Residues: | 231, 232, 234, 245, 249, 250 |
3D-footprint Homologues: | 1gat_A, 4hc9_A, 3dfx_B, 3vd6_C, 4gat_A |
Binding Motifs: | M0759_1.02 tAGATCTG MA1014.1 tAGATCTG M0284 rrawyyRGATCTgad |
Binding Sites: | MA1014.1.1 MA1014.1.10 MA1014.1.11 MA1014.1.12 MA1014.1.13 MA1014.1.14 MA1014.1.15 MA1014.1.16 MA1014.1.17 MA1014.1.18 MA1014.1.19 MA1014.1.2 MA1014.1.20 MA1014.1.3 MA1014.1.4 MA1014.1.5 MA1014.1.6 MA1014.1.7 MA1014.1.8 MA1014.1.9 |
Publications: | Jeong MJ, Shih MC. Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Biochem Biophys Res Commun 300:555-62 (2003). [Pubmed] |
Related annotations: | PaperBLAST |
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