Transcription Factor

Accessions: 5jgh_A (3D-footprint 20231221), 5jgh_G (3D-footprint 20231221), 5jh0_A (3D-footprint 20231221)
Names: ABF2_YEAST, ARS-binding factor 2, mitochondrial
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: Q02486
Length: 156
Pfam Domains: 17-79 Domain of unknown function (DUF1898)
17-84 HMG (high mobility group) box
90-155 HMG (high mobility group) box
Sequence:
(in bold interface residues)
1 KASKRTQLRNELIKQGPKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEA 60
61 DIKEKYISERKKLYSEYQKAKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQLDL 120
121 MKIIGDKWQSLDQSIKDKYIQEYKKAIQEYNARYPL
Interface Residues: 19, 22, 24, 25, 28, 32, 43, 44, 45, 48, 79, 82, 92, 95, 97, 98, 101, 105, 116, 117, 118, 121
3D-footprint Homologues: 4y60_C, 2gzk_A, 1j5n_A, 6jrp_D, 3u2b_C, 1o4x_B, 7m5w_A, 3f27_D, 4s2q_D, 1qrv_A, 1hry_A, 1ckt_A, 3tmm_A, 2lef_A, 3tq6_B
Binding Motifs: 5jgh_ADGJ TnATATAnnnnnATAAAnnnnATnATATAnnnnnnTAAAnnnnATnATATnnnnnnnTAAAnnnnnTnATAnnnnnnnnTAAA
5jh0_AD AATAnnnnnnnATATAATAnnnAATAnnnnnnnnTATaAT
Publications: Chakraborty A, Lyonnais S, Battistini F, Hospital A, Medici G, Prohens R, Orozco M, Vilardell J, Solà M. DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p. Nucleic Acids Res 45:951-967 (2017). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.