Transcription Factor
| Accessions: | srp (DrosophilaTF 1.1) |
| Names: | ABF, Box A-binding factor, dGATA-B, GATA-binding factor B, Protein serpent, SRP_DROME, Transcription factor GATA-B |
| Organisms: | Drosophila melanogaster |
| Libraries: | DrosophilaTF 1.1 1 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] |
| Uniprot: | P52172 |
| Length: | 1265 |
| Pfam Domains: | 803-836 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 MTKTTKPKEKAAAGGAVIGSGSGLGSVTKAGGGSLLSNAADSKIRTAKSNNNKRQAGRAA 60 61 TALAATTTASALAATTTAGATGSNAAANETEIAIETENGEAATPTAAATAAAANLSSLES 120 121 ARSQALTSVVSETARQAVTTANASATSTSTVTAATEIATATASDTAATSEAAIDDDPSAI 180 181 NTNNNNNNSKAQNDASESVKTKVISYHQSEDQQQQQQQQAQIYEQQQQFLSQQLISHHQQ 240 241 EQHQQAQQQQHQQVVQEQHQASWLAYDLTSGSAAAAAAAAAAASHPHLFGQFSYPPSHHT 300 301 PTQLYEHYPSTDPIMRNNFAFYSVYTGGGGGVGVGMTSHEHLAAAAAAAAAVAQGTTPNI 360 361 DEVIQDTLKDECFEDGHSTDYHVLTSVSDMHTLKDSSPYALTHEQLHQQQHHHQQQLHHH 420 421 QQQQQQLYHQQQQQQQQQQHHHHHNNSTSSAGGDSPSSSHALSTLQSFTQLTSATQRDSL 480 481 SPENDAYFAAAQLGSSLQNSSVYAGSLLTQTANGIQYGMQSPNQTQAHLQQQHHQQQQQQ 540 541 HQQHQQQQLQQQQQQHHHNQHQHHNSSSSSPGPAGLHHSSSSAATAAAVAAATAAVNGHN 600 601 SSLEDGYGSPRSSHSGGGGGGTLPAFQRIAYPNSGSVERYAPITNYRGQNDTWFDPLSYA 660 661 TSSSGQAQLGVGVGAGVVSNVIRNGRAISAANAAAAAAADGTTGRVDPGTFLSASASLSA 720 721 MAAESGGDFYKPNSFNVGGGGRSKANTSGAASSYSCPGSNATSAATSAVASGTAATAATT 780 781 LDEHVSRANSRRLSASKRAGLSCSNCHTTHTSLWRRNPAGEPVCNACGLYYKLHSVPRPL 840 841 TMKKDTIQKRKRKPKGTKSEKSKSKSKNALNAIMESGSLVTNCHNVGVVLDSSQMDVNDD 900 901 MKPQLDLKPYNSYSSQPQQQLPQYQQQQQLLMADQHSSAASSPHSMGSTSLSPSAMSHQH 960 961 QTHPHQQQQQQLCSGLDMSPNSNYQMSPLNMQQHQQQQSCSMQHSPSTPTSIFNTP SPT 1020 1021 HQLHNNNNNNNNSSIFNNNNNNNSSSNENNNKLIQKYLQAQQLSSSSNSGSTSDHQLLAQ 1080 1081 LLPNSITAAAAAAAAAAAAAIKTEALSLTSQANCSTASAGLMVTSTPTTASSTLSSLSHS 1140 1141 NIISLQNPYHQAGMTLCKPTRPSPPYYLTPEEDEQPALIKMEEMDQSQQQQQQQQHQQQQ 1200 1201 HGEIMLSRSASLDEHYELAAFQRHQQQQQQLQQQTAALLGQHEQHVTNYAMHKFGVDRET 1260 1261 VVKME |
| Interface Residues: | 812, 813, 815, 825, 829, 830, 833, 850, 852, 853 |
| 3D-footprint Homologues: | 3dfx_B, 1gat_A, 3vd6_C, 4gat_A |
| Binding Motifs: | srp kyGATAAsry |
| Binding Sites: | srp_1 srp_10 srp_11 srp_12 srp_13 srp_14 srp_15 srp_16 srp_17 srp_18 srp_19 srp_2 srp_20 srp_21 srp_22 srp_23 srp_24 srp_25 srp_26 srp_27 srp_28 srp_29 srp_3 srp_30 srp_31 srp_32 srp_4 srp_5 srp_6 srp_7 srp_8 srp_9 |
| Publications: | Senger K, Armstrong G.W, Rowell W.J, Kwan J.M, Markstein M, Levine M. Immunity regulatory DNAs share common organizational features in Drosophila. Molecular cell 13:19-32 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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