Transcription Factor
| Accessions: | B9DI20 (JASPAR 2024), T26167 (AthalianaCistrome v4_May2016) |
| Names: | SP13A_ARATH, AT5G50670, SPL13, T26167; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:SBP |
| Length: | 359 |
| Pfam Domains: | 100-177 SBP domain |
| Sequence: (in bold interface residues) | 1 MDWNFKLSSGYLSGFDQEPDLSPMDGSISFGGSSQSKADFSFDLKLGRNIGNSSSVFGDT 60 61 EQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRH 120 121 KVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHI 180 181 GRPANFFTGFQGSKLLEFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQSQSYVVG 240 241 SSPAKTGIMFPISSSPNSTRSIAKQFPFLQEEESSRTASLCERMTSCIHDSDCALSLLSS 300 301 SSSSVPHLLQPPLSLSQEAVETVFYGSGLFENASAVSDGSVISGNEAVRLPQTFPFHWE |
| Interface Residues: | 104, 107, 111, 112, 114, 115, 118, 119 |
| 3D-footprint Homologues: | 1a6y_A, 4oln_B |
| Binding Motifs: | M0739 / MA1321.1 wttGTACGGwh MA1321.2 tGTACGGw |
| Binding Sites: | MA1321.2.17 / MA1321.2.18 MA1321.2.8 MA1321.2.15 MA1321.1.1 MA1321.1.10 MA1321.1.11 MA1321.1.12 MA1321.1.13 MA1321.1.14 MA1321.1.15 MA1321.1.16 MA1321.1.17 / MA1321.1.18 MA1321.1.19 MA1321.1.2 MA1321.1.20 MA1321.1.3 MA1321.1.4 MA1321.1.5 MA1321.1.6 MA1321.1.7 MA1321.1.8 MA1321.1.9 MA1321.2.12 MA1321.2.1 MA1321.2.10 MA1321.2.11 MA1321.2.13 MA1321.2.14 MA1321.2.16 MA1321.2.19 MA1321.2.2 MA1321.2.20 MA1321.2.3 MA1321.2.4 MA1321.2.5 MA1321.2.6 MA1321.2.7 MA1321.2.9 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.