Transcription Factor
| Accessions: | T002818_1.02 (CISBP 1.02), A9RC32 (JASPAR 2024) |
| Names: | fgenesh1_pg.scaffold_1000495, T002818_1.02;, A9RC32_PHYPA |
| Organisms: | Physcomitrella patens, moss |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:AP2 |
| Length: | 373 |
| Pfam Domains: | 144-187 AP2 domain |
| Sequence: (in bold interface residues) | 1 MPDVSKVFLQHTRDVDATLLQQSVVGWASRCVCGGVKSEIYECLTCPGSSEAVKVGLKSG 60 61 LDASTWKLEAISGVPSSQSGGIEEKDGGATHRAAKNRASTRTIAHGSVVNGGDLRRSRDS 120 121 SPDPPIKPQRGRPPNGTKPWYLNRFKGVRKRRNVRGFLVEIRPPRWKKTIWLGTYNTDEE 180 181 AAGAFDAGLFYTKKKIRYNFPMLAKSFPPLPEDLALDREEDAEKIKEFVKAQAAQAAAKI 240 241 KSMNIVSETTDNSRSPINICNEAENNYNDRVVENTSHIPSCQESAQPADLTSHDFCVDQY 300 301 AHNLLCDQPDFDQYALQDMIHDYLNYHQFTPLVPYAPMPSFGDAVTDLNVGDMADHGVSR 360 361 MLPSNLDLDSEDY |
| Interface Residues: | 149, 151, 152, 153, 160, 162, 169, 171 |
| 3D-footprint Homologues: | 5wx9_A, 1gcc_A, 7et4_D |
| Binding Motifs: | M0074_1.02 hTGTCGGTawaaa MA1010.1 hTGTCGGTawaaa MA1010.2 TGTCGGTa |
| Publications: | Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.