Transcription Factor
| Accessions: | Q6R053 (JASPAR 2024), T22285 (AthalianaCistrome v4_May2016) |
| Names: | AtMYB56, Myb-related protein 56, MYB56_ARATH, Protein BRASSINOSTEROIDS AT VASCULAR AND ORGANIZING CENTER, Transcription factor MYB56, AT5G17800, MYB56, T22285; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 323 |
| Pfam Domains: | 93-138 Myb-like DNA-binding domain 96-156 Myb-like DNA-binding domain 146-188 Myb-like DNA-binding domain 148-193 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MNPNLLEKDLRGKETTNGSIRYKEANNFRSLPNSHTAACKTSLNNPSISRNHPHNKSASV 60 61 LESEDEHGNERGENEKSLRMRGKSGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLIS 120 121 NHLLGRSGKSCRLRWFNQLDPRINKRAFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDN 180 181 AVKNHWHVIMARRTRESQRQRQQPPPTLSRDAEMTVSSSCRYNQGKFINEEDDDDDVSAV 240 241 STCTTELSLTPPSSAYQPRFFNYDSTLASGKDGQCVQRAEVNGIYGKKMDHQNHHTISVS 300 301 ERKVEMKMRSGYYYFDFLGVGAS |
| Interface Residues: | 93, 127, 128, 129, 130, 132, 133, 137, 138, 179, 180, 183, 184, 187, 188, 189 |
| 3D-footprint Homologues: | 3osg_A, 2kdz_A, 7xur_A, 5eyb_B, 6kks_A, 3zqc_A, 1mse_C |
| Binding Motifs: | M0545 / MA1174.1 wwwaaTAACGGwwwt M0522 wwawTAACGGwwwyw MA1174.2 aTAACGGwww |
| Binding Sites: | MA1174.1.1 MA1174.1.10 MA1174.1.11 MA1174.1.12 MA1174.1.13 MA1174.1.14 MA1174.1.15 MA1174.1.16 MA1174.1.17 MA1174.1.18 MA1174.1.19 MA1174.1.2 MA1174.1.20 MA1174.1.3 MA1174.1.4 MA1174.1.5 MA1174.1.6 MA1174.1.7 MA1174.1.8 MA1174.1.9 MA1174.2.1 MA1174.2.10 MA1174.2.11 MA1174.2.12 MA1174.2.13 MA1174.2.14 MA1174.2.15 MA1174.2.16 MA1174.2.17 MA1174.2.18 MA1174.2.19 MA1174.2.2 MA1174.2.20 MA1174.2.3 MA1174.2.4 MA1174.2.5 MA1174.2.6 MA1174.2.7 MA1174.2.8 MA1174.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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