Transcription Factor

						

			
Accessions: MYB1 (Athamap 20091028), Q42575 (JASPAR 2024), T11778 (AthalianaCistrome v4_May2016)

			
Names: At3g09230, ATMYB1 protein, F3L24.10 protein, Myb domain protein 1, MYB transcription factor, MYB1, AtMYB1, Myb-related protein 1, MYB1_ARATH, Transcription factor MYB1, T11778;
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009).  [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Uniprot: Q42575
Notes: ecotype:Col-0, experiment type: DAP-seq, family:MYB
Length: 393
Pfam Domains:    55-100 Myb-like DNA-binding domain
   58-117 Myb-like DNA-binding domain
  107-150 Myb-like DNA-binding domain
  110-156 Myb-like DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MEAEIVRRSEVTGLRREVEESSIGRGDCDGDGGDVGEDAAGFVGTSGRGRRDRVKGPWSK   60
  61 EEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNSFTEVEDQAIIA  120
 121 AHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRRFIDFEKAKNIGTGSLVVDDSGFDRT  180
 181 TTVASSEETLSSGGGCHVTTPIVSPEGKEATTSMEMSEEQCVEKTNGEGISRQDDKDPPT  240
 241 LFRPVPRLSSFNACNHMEGSPSPHIQDQNQLQSSKQDAAMLRLLEGAYSERFVPQTCGGG  300
 301 CCSNNPDGSFQQESLLGPEFVDYLDSPTFPSSELAAIATEIGSLAWLRSGLESSSVRVME  360
 361 DAVGRLRPQGSRGHRDHYLVSEQGTNITNVLST
Interface Residues: 55, 89, 90, 91, 92, 94, 95, 98, 99, 100, 141, 142, 145, 146, 149, 150, 151, 290, 324, 327, 329, 331, 333, 335, 336
3D-footprint Homologues: 1vfc_A, 3osg_A, 2kdz_A, 7xur_A, 7c4r_A, 3zqc_A, 5eyb_B, 6kks_A, 1mse_C, 2qsh_A
Binding Motifs: MYB1 yCTAACTG
M0573 / MA1179.1 dtwaCsGTTwwwdhtsttd
MA1179.2 aCsGTTw
Binding Sites: MYB1_1
MYB1_2
			
Publications: Urao T., Yamaguchi-Shinozaki K., Urao S., Shinozaki K. An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Plant Cell 5:1529-1539 (1993). [Pubmed]


Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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