Transcription Factor
| Accessions: | I3NN78 (JASPAR 2024) |
| Names: | I3NN78_SOLLC |
| Organisms: | Solanum lycopersicum |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | I3NN78 |
| Length: | 310 |
| Pfam Domains: | 134-159 C2H2-type zinc finger 135-157 C2H2-type zinc finger 195-218 C2H2-type zinc finger 195-217 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MSIEALKSPMAAKLSPTVAELPPLEEIDDDSHNLDSWAKGKRSKRPRIENPPTRDQYLAL 60 61 CLLMLANDDGTGFGKGKGNGTGSIGVEQTEKKPAELKPVFIEEKTEQLLKPVVDKEKTEQ 120 121 LLKPVVVKEKTEQLFRCSECPKVFTSYQALGGHKASHRKINVPATGDDDSNPSTSTSTSG 180 181 GGVNISALNPSGRSHVCSICQKAFPTGQALGGHKRRHYEGKLGGNNRYIGGGGEGGGVHS 240 241 GSVVTTSDGGSGNGGGGASTPIARDFDLNMPASPGWQLDLTIDCGGRTQHPIEQEVESPM 300 301 PAKKPRLFFE |
| Interface Residues: | 146, 147, 148, 149, 151, 152, 178, 179, 181, 182, 184, 185, 186, 187, 190, 205, 206, 207, 208, 209, 210, 212, 213, 216 |
| 3D-footprint Homologues: | 2drp_D, 1mey_C, 5v3j_F, 7y3m_I, 6e94_A, 5yel_A, 6ml4_A, 8cuc_F, 7y3l_A, 4m9v_C, 8gh6_A |
| Binding Motifs: | MA1405.1 gACTGwCAGT MA1405.2 ACTGwCAGT |
| Publications: | Kubo Ki, Sakamoto A, Kobayashi A, Rybka Z, Kanno Y, Nakagawa H, Takatsuji H. Cys2/His2 zinc-finger protein family of petunia: evolution and general mechanism of target-sequence recognition. Nucleic Acids Res 26:608-15 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.