Transcription Factor

						

			
Accessions: Bcd (SMILE-seq 1.0)

			
Names: Bcd, STAU_DROME
Organisms: Drosophila melanogaster
Libraries: SMILE-seq 1.0 1
1 Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed]
Uniprot: P25159
Length: 488
Pfam Domains:    93-148 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MAQPPPDQNFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQHPQLQLPPQFRNPFDLLFDER   60
  61 TGAINYNYIRPYLPNQMPKPEELPDSLVMRRPRRTRTTFTSSQIAELEQHFLQGRYLTAP  120
 121 RLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEGMPLSPGMKQSDGDPPSLQT  180
 181 LSLGGGATPNALTPSPTPSTPTAHMTEHYSESFNAYYNYNGGHNHAQANRHMHMQYPSGG  240
 241 GPGPGSTNVNGGQFFQQQQVHNHQQQLHHQGNHVPHQMQQQQQQAQQQQYHHFDFQQKQA  300
 301 SACRVLVKDEPEADYNFNSSYYMRSGMSGATASASAVARGAASPGSEVYEPLTPKNDESP  360
 361 SLCGIGIGGPCAIAVGETEAADDMDDGTSKKTTLQILEPLKGLDKSCDDGSSDDMSTGIR  420
 421 ALAGTGNRGAAFAKFGKPSPPQGPQPPLGMGGVAMGESNQYQCTMDTIMQAYNPHRNAAG  480
 481 NSQFAYCF
Interface Residues: 65, 93, 94, 95, 96, 134, 135, 137, 138, 141, 142, 145, 146, 147, 149, 151
3D-footprint Homologues: 3l1p_A, 5zfz_A, 6fqp_B, 3d1n_M, 1fjl_B, 6a8r_A, 2h1k_B, 1puf_A, 1ig7_A, 3cmy_A, 1jgg_B, 1nk2_P, 1zq3_P, 6m3d_C, 3lnq_A, 2lkx_A, 7q3o_C, 2ld5_A, 6es3_K, 3rkq_B, 2r5y_A, 1puf_B, 5flv_I, 2hos_A, 5zjt_E, 4cyc_A, 1au7_A, 5hod_A, 3a01_E, 7psx_B, 1b72_A, 5jlw_D, 4xrs_G, 2hdd_A, 7xrc_C, 1e3o_C, 2xsd_C, 1le8_A, 1mnm_C, 1du0_A, 1k61_B, 1o4x_A, 8g87_X, 4qtr_D
Binding Motifs: Bcd yTAATCY
			
Publications: Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.