Transcription Factor
| Accessions: | O24463 (JASPAR 2024) |
| Names: | Dof zinc finger protein PBF, PBF_MAIZE, Prolamin box-binding factor |
| Organisms: | Zea mays, Zea mays subsp. mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 328 |
| Pfam Domains: | 57-116 Dof domain, zinc finger |
| Sequence: (in bold interface residues) | 1 MDMISGSTAATSTPHNNQQAVMLSSPIIKEEARDPKQTRAMPQIGGSGERKPRPQLPEAL 60 61 KCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGGCRKNKHASRFVL 120 121 GSHTSSSSSATYAPLSPSTNASSSNMSINKHMMMVPNMTMPTPTTMGLFPNVLPTLMPTG 180 181 GGGGFDFTMDNQHRSLSFTPMSLPSQGPVPMLAAGGSEATPSFLEMLRGGIFHGSSSYNT 240 241 SLTMSGGNNGMDKPFSLPSYGAMCTNGLSGSTTNDARQLVGPQQDNKAIMKSSNNNNGVS 300 301 LLNLYWNKHNNNNNNNNNNNNNNNNKGQ |
| Interface Residues: | 20, 75, 96, 102, 104, 122, 123, 126 |
| 3D-footprint Homologues: | 3qx3_B, 5omv_A, 2drp_D, 3wpg_A, 1lwt_A |
| Binding Motifs: | MA0064.1 AAAGy |
| Binding Sites: | MA0064.1.1 MA0064.1.10 MA0064.1.11 / MA0064.1.12 MA0064.1.13 / MA0064.1.14 MA0064.1.15 MA0064.1.16 MA0064.1.2 MA0064.1.3 / MA0064.1.4 MA0064.1.5 MA0064.1.6 MA0064.1.7 MA0064.1.8 MA0064.1.9 |
| Publications: | Yanagisawa S., Schmidt R. J. Diversity and similarity among recognition sequences of Dof transcription factors.. Plant J. 17:209-214 (1999). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.