Transcription Factor

Accessions: P31360 (JASPAR 2024)
Names: Brain-2, Brain-specific homeobox/POU domain protein 2, Brn-2, Nervous system-specific octamer-binding transcription factor N-Oct-3, Oct-7, Octamer-binding protein 7, Octamer-binding transcription factor 7, OTF-7, PO3F2_MOUSE, POU domain, class 3, transcription factor 2
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 445
Pfam Domains: 265-338 Pou domain - N-terminal to homeobox domain
357-413 Homeobox domain
Sequence:
(in bold interface residues)
1 MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQ 60
61 WITALSHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHG 120
121 PGALQQQHQQQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLP 180
181 PSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQ 240
241 PPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTL 300
301 YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKR 360
361 TSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGT 420
421 LPGAEDVYGGSRDTPPHHGVQTPVQ
Interface Residues: 290, 306, 307, 308, 309, 311, 312, 318, 322, 355, 357, 358, 359, 360, 398, 399, 401, 402, 405, 406, 409, 410, 413
3D-footprint Homologues: 7u0g_M, 3l1p_A, 3d1n_M, 2xsd_C, 1e3o_C, 7xrc_C, 1au7_A, 1o4x_A, 8g87_X, 3lnq_A, 5zfz_A, 1fjl_B, 3cmy_A, 2h1k_B, 5zjt_E, 1puf_A, 1ig7_A, 6a8r_A, 1jgg_B, 1nk2_P, 1zq3_P, 2lkx_A, 2ld5_A, 1puf_B, 4xrs_G, 3a01_E, 1b72_A, 3rkq_B, 2r5y_A, 5hod_A, 5jlw_D, 1le8_A, 7q3o_C, 4cyc_A, 6es3_K, 1k61_B, 7psx_B, 5flv_I, 2hdd_A, 1mnm_C, 1du0_A
Binding Motifs: PH0147.1 swtAaTTAATTArkkyr
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.