Transcription Factor
| Accessions: | T089483_1.02 (CISBP 1.02) |
| Names: | a2-1, T089483_1.02; |
| Organisms: | Coprinopsis cinerea |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 520 |
| Pfam Domains: | 150-204 Homeobox domain 169-201 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 MAGPSRAAKFASSARKIANTSRDLMAFLGASRTRTLPRRSSTAIEIPPLNLPLPEELLDV 60 61 VLAYDVPPAVMEGVQQTLRNALLQLQTECKNKYIKTCQALSDLPDTSASRHRLQQINKTF 120 121 TKLYITRHAPRLREQVIAQLETKLAAPPSKKQAFNVHYIPVLEKYFEYNAYPTAQDRALL 180 181 ARKSMMSARQIEVWFQNHRRRARKEGKPLQRPSPDTLPVQICLDSLEQEMAPFVSHKRER 240 241 CPSADLNPRTRFPTPPAEPSPSTSRSGSLGPQHPKQDNVLDHAISPMYAFPTKFSELPNI 300 301 GVDPFPCKQGPISLPAPVWASRSHTRPQREPCSVTELCDAFGMMRIAGSPSKASSSSPWY 360 361 SSRCNGPIVAPLPALIRPSLPRPSLIVESSEASRSKSPRSVSSSCVRTKQCRQSTLRTCL 420 421 TGCPAQFGKKSLARASSNSSLSSQGSWSDLETPESSPNPSSTIGLPSVYGVDEVHFAPMS 480 481 DPSHQASSVAFESYAALCPKTFTEALSWSLSTRHSASLLP |
| Interface Residues: | 116, 117, 118, 121, 122, 123, 125, 127, 128, 146, 149, 150, 151, 152, 153, 155, 189, 190, 192, 193, 196, 197, 200, 201, 202, 203, 204 |
| 3D-footprint Homologues: | 1au7_A, 1o4x_A, 6m3d_C, 1zq3_P, 1mnm_C, 1puf_B, 1jgg_B, 3lnq_A, 2hos_A, 6a8r_A, 5jlw_D, 5zfz_A, 4cyc_A, 2lkx_A, 1puf_A, 2hdd_A, 3d1n_M, 1nk2_P, 2ld5_A, 7q3o_C, 1e3o_C, 1le8_A, 1ig7_A, 1du0_A, 5zjt_E, 4qtr_D, 2r5y_A, 6fqq_E, 5hod_A, 8g87_X, 4xrm_B, 3a01_E, 1k61_B, 3rkq_B, 1fjl_B, 6es3_K, 4xrs_G, 3cmy_A, 2h1k_B, 7psx_B, 1b72_A, 6fqp_B, 5flv_I |
| Binding Motifs: | M0830_1.02 AACCAATCA |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.