Transcription Factor

Accessions: T116785_1.02 (CISBP 1.02), Q8VZS3 (JASPAR 2024), T06046 (AthalianaCistrome v4_May2016)
Names: AT1G68670, T116785_1.02;, HHO2_ARATH, MYB-domain transcription factor HHO2, Protein HRS1 HOMOLOG 2, Transcription factor HHO2, T06046;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: experiment type:PBM, family:Myb/SANT, ecotype:Col-0, experiment type: DAP-seq, family:G2-like
Length: 354
Pfam Domains: 217-268 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MMVEMDYAKKMQKCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIEACRKELSGTTTTT 60
61 SEQCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEEEEDGEHESSPELVNNKKSDWLRS 120
121 VQLWNHSPDLNPKEERVAKKAKVVEVKPKSGAFQPFQKRVLETDLQPAVKVASSMPATTT 180
181 SSTTETCGGKSDLIKAGDEERRIEQQQSQSHTHRKQRRCWSPELHRRFLNALQQLGGSHV 240
241 ATPKQIRDHMKVDGLTNDEVKSHLQKYRLHTRRPAATSVAAQSTGNQQQPQFVVVGGIWV 300
301 PSSQDFPPPSDVANKGGVYAPVAVAQSPKRSLERSCNSPAASSSTNTNTSTPVS
Interface Residues: 217, 257, 258, 261, 262, 265, 266
3D-footprint Homologues: 6j5b_C, 6qec_A, 7d3t_D
Binding Motifs: M1321_1.02 rkrGaATctw
M0387 / MA1390.1 gaATcaaAGATTC
MA1390.2 hdAAGATTCcawww
MA1390.3 AAGATTCc
Binding Sites: MA1390.3.15 / MA1390.3.20
MA1390.3.4
MA1390.3.2
MA1390.1.1
MA1390.1.10
MA1390.1.11
MA1390.1.12
MA1390.1.13
MA1390.1.14
MA1390.1.15
MA1390.1.16
MA1390.1.17
MA1390.1.18
MA1390.1.19
MA1390.1.2
MA1390.1.20
MA1390.1.3
MA1390.1.4
MA1390.1.5
MA1390.1.6
MA1390.1.7
MA1390.1.8
MA1390.1.9
MA1390.2.1
MA1390.2.10
MA1390.2.11
MA1390.2.12
MA1390.2.13
MA1390.2.14
MA1390.2.15
MA1390.2.16
MA1390.2.17
MA1390.2.18
MA1390.2.19
MA1390.2.2
MA1390.2.20
MA1390.2.3
MA1390.2.4
MA1390.2.5
MA1390.2.6
MA1390.2.7
MA1390.2.8
MA1390.2.9
MA1390.3.1
MA1390.3.5 / MA1390.3.6
MA1390.3.16
MA1390.3.7
MA1390.3.10
MA1390.3.11
MA1390.3.12
MA1390.3.13 / MA1390.3.18
MA1390.3.14
MA1390.3.17 / MA1390.3.9
MA1390.3.19
MA1390.3.3
MA1390.3.8
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Related annotations: PaperBLAST

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