Transcription Factor
| Accessions: | MYB3R5 (JASPAR 2024), T22271 (AthalianaCistrome v4_May2016), Q6R032 (JASPAR 2024) |
| Names: | MB3R5_ARATH, Myb-related protein 3R-5, Transcription factor MYB3R-5, AT5G02320, MYB3R5, T22271; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:MYB |
| Length: | 548 |
| Pfam Domains: | 75-121 Myb-like DNA-binding domain 78-137 Myb-like DNA-binding domain 127-173 Myb-like DNA-binding domain 130-190 Myb-like DNA-binding domain 179-222 Myb-like DNA-binding domain 182-228 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSSSSNPPVCSPEKEERSEMKIEIQCMENKQPLAASCSSASEGSGCFFLKSPEIATPATV 60 61 SSFPRRTSGPMRRAKGGWTPEEDETLRRAVEKYKGKRWKKIAEFFPERTEVQCLHRWQKV 120 121 LNPELVKGPWTQEEDDKIVELVKKYGPAKWSVIAKSLPGRIGKQCRERWHNHLNPGIRKD 180 181 AWTVEEESALMNSHRMYGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLEFYLATGNLPPP 240 241 ASKFIVLKDIADGDRDSKQSSATKPFKDSDSLTQTSSGNTDSNEVGRDHFDSSSALLEEV 300 301 AASRRIGVNEYACSPVEYKPQLPNLEPISEEVRINSKAYFERSIQRKVENGFGTPKHGNL 360 361 YYKSPLDYYFPSEADLQHMYGYECGCSPGAASPVSLMTTPCNKDSGLTATRSPESFLREA 420 421 ARTFPNTPSIFRKRRKVVLAAKTDAVVVVNGVVKEVDRKEESKDMRKSLLLETTDNCSDD 480 481 EELGLNGNAFNLSPPYRLRAKRTAVIKSRQLEFTSEKEKQPDNEIEFTSAKEKQPDNEIK 540 541 TSEEDKPV |
| Interface Residues: | 61, 62, 65, 66, 75, 110, 111, 114, 115, 118, 119, 127, 161, 162, 163, 164, 166, 167, 170, 171, 172, 178, 179, 198, 213, 214, 215, 217, 218, 221, 222, 223 |
| 3D-footprint Homologues: | 5eyb_B, 1w0t_A, 7c4r_A, 7xur_A, 3osg_A, 1vfc_A, 2kdz_A, 6kks_A, 3zqc_A, 1mse_C, 6cnb_S, 1ign_A |
| Binding Motifs: | M0535 / MA1172.1 aawwwwTdRCCGTTr MA1172.2 awwwwTdRCCGTTr |
| Binding Sites: | MA1172.1.1 MA1172.1.10 / MA1172.1.9 MA1172.1.11 MA1172.1.12 MA1172.1.13 MA1172.1.14 MA1172.1.15 / MA1172.1.16 MA1172.1.17 MA1172.1.18 MA1172.1.19 MA1172.1.2 MA1172.1.20 MA1172.1.3 MA1172.1.4 MA1172.1.5 MA1172.1.6 MA1172.1.7 MA1172.1.8 MA1172.2.1 MA1172.2.10 / MA1172.2.9 MA1172.2.11 MA1172.2.12 MA1172.2.13 MA1172.2.14 MA1172.2.15 / MA1172.2.16 MA1172.2.17 MA1172.2.18 MA1172.2.19 MA1172.2.2 MA1172.2.20 MA1172.2.3 MA1172.2.4 MA1172.2.5 MA1172.2.6 MA1172.2.7 MA1172.2.8 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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