Transcription Factor
| Accessions: | Q9XEC3 (JASPAR 2024), T16951 (AthalianaCistrome v4_May2016) |
| Names: | WRK42_ARATH, WRKY DNA-binding protein 42, WRKY transcription factor 42, AT4G04450, T16951;, WRKY42 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:WRKY |
| Length: | 528 |
| Pfam Domains: | 292-350 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 MFRFPVSLGGGPRENLKPSDEQHQRAVVNEVDFFRSAEKRDRVSREEQNIIADETHRVHV 60 61 KRENSRVDDHDDRSTDHINIGLNLLTANTGSDESMVDDGLSVDMEEKRTKCENAQLREEL 120 121 KKASEDNQRLKQMLSQTTNNFNSLQMQLVAVMRQQEDHHHLATTENNDNVKNRHEVPEMV 180 181 PRQFIDLGPHSDEVSSEERTTVRSGSPPSLLEKSSSRQNGKRVLVREESPETESNGWRNP 240 241 NKVPKHHASSSICGGNGSENASSKVIEQAAAEATMRKARVSVRARSEAPMLSDGCQWRKY 300 301 GQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMAS 360 361 TTTAAASMLLSGSTMSNQDGLMNPTNLLARTILPCSSSMATISASAPFPTITLDLTESPN 420 421 GNNPTNNPLMQFSQRSGLVELNQSVLPHMMGQALYYNQQSKFSGLHMPSQPLNAGESVSA 480 481 ATAAIASNPNFAAALAAAITSIINGSNNQQNGNNNNSNVTTSNVDNRQ |
| Interface Residues: | 298, 299, 300, 302, 303, 314 |
| 3D-footprint Homologues: | 6ir8_A, 6j4e_B, 6j4f_F, 6j4g_B, 7z0u_A |
| Binding Motifs: | M0839 / MA1310.1 tttkamhyrkcGTTGACywwk M0838 wwawmwwrGTCAACgmhddk MA1310.2 cGTTGACy |
| Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
| Related annotations: | PaperBLAST |
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