Transcription Factor
| Accessions: | O65683 (JASPAR 2024), T20136 (AthalianaCistrome v4_May2016), AtbZIP11 (EEADannot 2023-12-22) |
| Names: | AtbZIP11, bZIP transcription factor 11, bZIP transcription factor ATB2, BZP11_ARATH, G-box-binding factor 6, AT4G34590, GBF6, T20136;, O65683;BZP11_ARATH;AT4G34590.1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2, EEADannot 2023-12-22 3 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 3 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP |
| Length: | 159 |
| Pfam Domains: | 25-67 Basic region leucine zipper 27-68 bZIP transcription factor |
| Sequence: (in bold interface residues) | 1 MESSSSGTTSSTIQTSSGSEESLMEQRKRKRMLSNRESARRSRMKKQKLLDDLTAQVNHL 60 61 KKENTEIVTSVSITTQHYLTVEAENSVLRAQLDELNHRLQSLNDIIEFLDSSNNNNNNNM 120 121 GMCSNPLVGLECDDFFVNQMNMSYIMNQPLMASSDALMY |
| Interface Residues: | 31, 35, 36, 38, 39, 42, 43 |
| 3D-footprint Homologues: | 7x5e_E, 5vpe_D, 1dh3_C, 5t01_B |
| Binding Motifs: | M0191 / MA1334.1 tGCCACGTCAkCwwh M0222 dwwgmTgACGTGkma EEAD0094 tGmCACGTsd EEAD0095 TGcTGAsktRGCrr EEAD0108 tGmCACGTsdb EEAD0109 ycacGTCAkCa EEAD0110 dwwgrhsACGTGKCa EEAD0111 TGmTGACkwgg EEAD0112 hsACGTGkCa EEAD0113 TCmTCaTCAtCaTC MA1334.2 tGCCACGTCAkCw |
| Binding Sites: | MA1334.1.1 MA1334.1.10 MA1334.1.11 MA1334.1.12 / MA1334.1.16 MA1334.1.13 MA1334.1.14 MA1334.1.15 MA1334.1.17 MA1334.1.18 MA1334.1.19 MA1334.1.2 MA1334.1.20 MA1334.1.3 MA1334.1.4 MA1334.1.5 MA1334.1.6 MA1334.1.7 MA1334.1.8 MA1334.1.9 MA1334.2.1 MA1334.2.10 MA1334.2.11 MA1334.2.12 MA1334.2.13 MA1334.2.14 MA1334.2.15 MA1334.2.16 MA1334.2.17 MA1334.2.18 MA1334.2.19 MA1334.2.2 MA1334.2.20 MA1334.2.3 MA1334.2.4 MA1334.2.5 MA1334.2.6 MA1334.2.7 MA1334.2.8 MA1334.2.9 |
| Publications: | Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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