Transcription Factor
| Accessions: | P32043 (JASPAR 2024) |
| Names: | Homeobox protein Hox-3.4, Homeobox protein Hox-6.2, Homeobox protein Hox-C5, HXC5_MOUSE |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | P32043 |
| Length: | 222 |
| Pfam Domains: | 156-212 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHG 60 61 VDMAANPRAHPDRPACSAAAAPGHALGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKE 120 121 EQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYL 180 181 TRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL |
| Interface Residues: | 142, 156, 157, 158, 159, 197, 198, 200, 201, 204, 205, 208, 209, 212 |
| 3D-footprint Homologues: | 5zfz_A, 6a8r_A, 2h1k_B, 1puf_A, 1fjl_B, 3cmy_A, 3d1n_M, 1zq3_P, 1jgg_B, 3lnq_A, 2lkx_A, 6m3d_C, 1nk2_P, 2ld5_A, 7q3o_C, 6es3_K, 5zjt_E, 4cyc_A, 7psx_B, 5hod_A, 3a01_E, 5jlw_D, 4xrs_G, 2hdd_A, 1b72_A, 3rkq_B, 2r5y_A, 1puf_B, 1ig7_A, 5flv_I, 2hos_A, 2xsd_C, 1e3o_C, 1le8_A, 7xrc_C, 1du0_A, 3l1p_A, 1o4x_A, 4qtr_D, 1k61_B |
| Binding Motifs: | PH0070.1 cgmrtTAATTAatwayt |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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