Transcription Factor
Accessions: | P91868 (JASPAR 2024) |
Names: | SNAPc subunit 4 homolog, SNPC4_CAEEL, snRNA-activating protein complex subunit 4 homolog |
Organisms: | Caenorhabditis elegans |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | P91868 |
Length: | 944 |
Pfam Domains: | 219-261 Myb-like DNA-binding domain 253-312 Myb-like DNA-binding domain 303-346 Myb-like DNA-binding domain 304-367 Myb-like DNA-binding domain 357-402 Myb-like DNA-binding domain 359-404 Myb-like DNA-binding domain 411-454 Myb-like DNA-binding domain |
Sequence: (in bold interface residues) | 1 MSDLVMFEPGASTSTDVPTNTDQTAMSTTQVVDALECDTFEGLMNVNETYVEILDSALLS 60 61 VQQHLDDNLKRQQQLKEEYRLYNRADITKRKVPVHLYMPPYFKDDNNMYPPMSSEAREKQ 120 121 VLKWFDPMMKEEKKWTPSEIKTLRTSVKNALVAHQVQPWCSRRDIVASKLRDADITTSNF 180 181 DRRQWTMELEDLMRKIAYVREKSEEEVLTASADYTVVPWTAIANFDFKGSRTEWAVKSKW 240 241 YNELNPKWNKEHWSNEEVEKLKYLRESPKFVSWPMLALNLGTNRTSYQCMEKYKTEVSQH 300 301 SKEWSQDEDTKLIALTKITSINGHIQWDKVAQCMPGRTRQQVRTRFSHTLDASVKHGRWT 360 361 DQEDVLLVCAVSRYGAKDWAKVAQAVQNRNDSQCRERWTNVLNRSAHVNERFTLVEDEQL 420 421 LYAVKVFGKGNWAKCQMLLPKKTSRQLRRRYLQLIAAKLRLAAGFCNAVDAMKSGRRAPE 480 481 EDELEQEDIVEAEQIPNELMKEVYEKFANENPDMNETPEEFYKRVSALERPAAARIRALK 540 541 NKPDYQKIQDKINEIVQKHKNAAEIDKELHSSEILSSLTITEVDVRYMIERSKTLTRYYE 600 601 ARQFRKNVDQIGCRVRPIKIDLDPETMPTFDPNDAEDEKQMVIVESLCSVIRAHDVKEWG 660 661 TKFWNEHRFTAPKYAKRFVENMVINKSKEVAEWYLHVNSKSCNQNDVHCPAKSTLPPTAA 720 721 SFDLHKMLQKARSGLNRLSAEHFYPLDVSLAQQFNFKNDEREGLDGDRRMHIGLSDEVTN 780 781 SKEYANFYARMRSILLEPMRLGIARESSSDETKRLVRCLAEERACDEEQQVTCDQIRRRR 840 841 MPDDEIYVTPTSISRELNNGMKIDTTELLANLDKNSAKKIRMKRKIGEVRCDTKIKLLPL 900 901 VILATVATVAARPARPPRSSAGTPTPSHVSIDTESNISLKVELD |
Interface Residues: | 340, 343, 344, 348, 349, 356, 390, 391, 392, 393, 395, 396, 399, 400, 401, 444, 445, 448, 449, 452, 453 |
3D-footprint Homologues: | 6kks_A, 3osg_A, 7xur_A, 1vfc_A, 2kdz_A, 1w0t_A, 5eyb_B, 1mse_C, 3zqc_A |
Binding Motifs: | MA0544.1 rTGTCGGCyGCt |
Binding Sites: | MA0544.1.1 MA0544.1.10 / MA0544.1.7 MA0544.1.11 MA0544.1.12 MA0544.1.13 / MA0544.1.4 MA0544.1.14 MA0544.1.15 MA0544.1.16 MA0544.1.17 MA0544.1.18 MA0544.1.19 / MA0544.1.5 MA0544.1.2 MA0544.1.20 MA0544.1.3 MA0544.1.6 MA0544.1.8 MA0544.1.9 |
Publications: | Xiao T, Wang Y, Luo H, Liu L, Wei G, Chen X, Sun Y, Chen X, Skogerbø G, Chen R. A differential sequencing-based analysis of the C. elegans noncoding transcriptome. RNA (New York, N.Y.) 18:626-39 (2012). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.