Transcription Factor

Accessions: P91868 (JASPAR 2024)
Names: SNAPc subunit 4 homolog, SNPC4_CAEEL, snRNA-activating protein complex subunit 4 homolog
Organisms: Caenorhabditis elegans
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: P91868
Length: 944
Pfam Domains: 219-261 Myb-like DNA-binding domain
253-312 Myb-like DNA-binding domain
303-346 Myb-like DNA-binding domain
304-367 Myb-like DNA-binding domain
357-402 Myb-like DNA-binding domain
359-404 Myb-like DNA-binding domain
411-454 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MSDLVMFEPGASTSTDVPTNTDQTAMSTTQVVDALECDTFEGLMNVNETYVEILDSALLS 60
61 VQQHLDDNLKRQQQLKEEYRLYNRADITKRKVPVHLYMPPYFKDDNNMYPPMSSEAREKQ 120
121 VLKWFDPMMKEEKKWTPSEIKTLRTSVKNALVAHQVQPWCSRRDIVASKLRDADITTSNF 180
181 DRRQWTMELEDLMRKIAYVREKSEEEVLTASADYTVVPWTAIANFDFKGSRTEWAVKSKW 240
241 YNELNPKWNKEHWSNEEVEKLKYLRESPKFVSWPMLALNLGTNRTSYQCMEKYKTEVSQH 300
301 SKEWSQDEDTKLIALTKITSINGHIQWDKVAQCMPGRTRQQVRTRFSHTLDASVKHGRWT 360
361 DQEDVLLVCAVSRYGAKDWAKVAQAVQNRNDSQCRERWTNVLNRSAHVNERFTLVEDEQL 420
421 LYAVKVFGKGNWAKCQMLLPKKTSRQLRRRYLQLIAAKLRLAAGFCNAVDAMKSGRRAPE 480
481 EDELEQEDIVEAEQIPNELMKEVYEKFANENPDMNETPEEFYKRVSALERPAAARIRALK 540
541 NKPDYQKIQDKINEIVQKHKNAAEIDKELHSSEILSSLTITEVDVRYMIERSKTLTRYYE 600
601 ARQFRKNVDQIGCRVRPIKIDLDPETMPTFDPNDAEDEKQMVIVESLCSVIRAHDVKEWG 660
661 TKFWNEHRFTAPKYAKRFVENMVINKSKEVAEWYLHVNSKSCNQNDVHCPAKSTLPPTAA 720
721 SFDLHKMLQKARSGLNRLSAEHFYPLDVSLAQQFNFKNDEREGLDGDRRMHIGLSDEVTN 780
781 SKEYANFYARMRSILLEPMRLGIARESSSDETKRLVRCLAEERACDEEQQVTCDQIRRRR 840
841 MPDDEIYVTPTSISRELNNGMKIDTTELLANLDKNSAKKIRMKRKIGEVRCDTKIKLLPL 900
901 VILATVATVAARPARPPRSSAGTPTPSHVSIDTESNISLKVELD
Interface Residues: 340, 343, 344, 348, 349, 356, 390, 391, 392, 393, 395, 396, 399, 400, 401, 444, 445, 448, 449, 452, 453
3D-footprint Homologues: 6kks_A, 3osg_A, 7xur_A, 1vfc_A, 2kdz_A, 1w0t_A, 5eyb_B, 1mse_C, 3zqc_A
Binding Motifs: MA0544.1 rTGTCGGCyGCt
Binding Sites: MA0544.1.1
MA0544.1.10 / MA0544.1.7
MA0544.1.11
MA0544.1.12
MA0544.1.13 / MA0544.1.4
MA0544.1.14
MA0544.1.15
MA0544.1.16
MA0544.1.17
MA0544.1.18
MA0544.1.19 / MA0544.1.5
MA0544.1.2
MA0544.1.20
MA0544.1.3
MA0544.1.6
MA0544.1.8
MA0544.1.9
Publications: Xiao T, Wang Y, Luo H, Liu L, Wei G, Chen X, Sun Y, Chen X, Skogerbø G, Chen R. A differential sequencing-based analysis of the C. elegans noncoding transcriptome. RNA (New York, N.Y.) 18:626-39 (2012). [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.