Transcription Factor

Accessions: O18400 (JASPAR 2024)
Names: D-PTX1, Pituitary homeobox homolog Ptx1, PITX_DROME
Organisms: Drosophila melanogaster
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 509
Pfam Domains: 265-321 Homeobox domain
457-474 OAR domain
Sequence:
(in bold interface residues)
1 MDRSSAVGGCGGGGGLGVGVVTSSATALGPGGLTNGGGGVVSGALNGLEAMSAESTGLCL 60
61 QDLVSAGTANGAGSAGSAESATTTSTALSSGSTGSSTVNGGGSSTSGTEHLHSHHSLHDS 120
121 SSSVSISPAISSLMPISSLSHLHHSAGQDLVGGYSQHPHHTVVPPHTPKHEPLEKLRIWA 180
181 ETGDFRDSHSSMTAVANSLDSTHLNNFQTSSTSSISNRSRDRKDGNRSVNETTIKTENIS 240
241 SSGHDEPMTTSGEEPKNDKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDMSTREEIAMW 300
301 TNLTEARVRVWFKNRRAKWRKRERNAMNAAVAAADFKSGFGTQFMQPFADDSLYSSYPYN 360
361 NWTKVPSPLGTKPFPWPVNPLGSMVAGNHHQNSVNCFNTGASGVAVSMNNASMLPGSMGS 420
421 SLSNTSNVGAVGAPCPYTTPANPYMYRSAAEPCMSSSMSSSIATLRLKAKQHASAGFGSP 480
481 YSAPSPVSRSNSAGLSACQYTGVGVTDVV
Interface Residues: 255, 264, 265, 266, 267, 268, 270, 306, 307, 309, 310, 313, 314, 317, 318, 321, 322, 351
3D-footprint Homologues: 5zfz_A, 4j19_B, 1fjl_B, 6fqp_B, 1ig7_A, 3cmy_A, 2h1k_B, 6m3d_C, 1puf_A, 6a8r_A, 3d1n_M, 1nk2_P, 1zq3_P, 3lnq_A, 2lkx_A, 1jgg_B, 6es3_K, 7q3o_C, 2ld5_A, 2hdd_A, 1mnm_C, 7psx_B, 5jlw_D, 4cyc_A, 2r5y_A, 1puf_B, 1au7_A, 4xrs_G, 3l1p_A, 2hos_A, 3a01_E, 1b72_A, 5flv_I, 5zjt_E, 5hod_A, 3rkq_B, 1k61_B, 1le8_B, 1e3o_C, 1le8_A, 7xrc_C, 1o4x_A, 4qtr_D, 1du0_A, 8g87_X, 4xrm_B
Binding Motifs: MA0201.1 YTAATCC
Binding Sites: MA0201.1.1
MA0201.1.10
MA0201.1.11
MA0201.1.12
MA0201.1.13
MA0201.1.14
MA0201.1.15
MA0201.1.16 / MA0201.1.19 / MA0201.1.20
MA0201.1.17
MA0201.1.18
MA0201.1.2
MA0201.1.3
MA0201.1.4
MA0201.1.5
MA0201.1.6
MA0201.1.7
MA0201.1.8
MA0201.1.9
Publications: Noyes M.B, Christensen R.G, Wakabayashi A, Stormo G.D, Brodsky M.H, Wolfe S.A. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 133:1277-89 (2008). [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.