Transcription Factor
| Accessions: | T061559_1.02 (CISBP 1.02), Q00453 (JASPAR 2024) |
| Names: | RGM1, T061559_1.02;, RGM1_YEAST |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 211 |
| Pfam Domains: | 19-44 C2H2-type zinc finger 19-44 Zinc finger, C2H2 type 36-60 Zinc-finger double domain 50-73 C2H2-type zinc finger 50-73 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MRGKQPKRNKDNASVKRNYRCVGYPDCNMSFNRTEHLARHIRKHTGEKPFQCNICLKFFS 60 61 RIDNLRQHQSSVHSDVDLMSLRRLQQSANSTANDPNATRMFPQLRPYGIVVQPAPVPYNL 120 121 PISTPASPQDTISLYAPPYFPHPMPSAPIPLPHQPPPLPIYSYMQPLFLNHTPIQNHNIV 180 181 ELPPDSSDTPASPSKVQSFDQAKDASPNAKK |
| Interface Residues: | 2, 4, 5, 8, 17, 32, 33, 34, 35, 36, 38, 39, 40, 41, 42, 45, 60, 61, 62, 63, 64, 65, 66, 67, 68, 90, 91, 92, 93, 193, 194, 196, 197 |
| 3D-footprint Homologues: | 7ysf_A, 1ubd_C, 7y3l_A, 7n5w_A, 2kmk_A, 1tf3_A, 3uk3_C, 8cuc_F, 1g2f_F, 6a57_A, 5k5i_A, 2lt7_A, 8ssu_A, 1tf6_A, 6ml4_A, 5v3j_F, 2i13_A, 8gn3_A, 1llm_D, 6blw_A, 5kkq_D, 2wbs_A, 6u9q_A, 5yel_A, 4x9j_A, 1mey_C, 7txc_E, 5kl3_A, 2drp_D, 1f2i_J, 5ei9_F, 8ssq_A, 7w1m_H, 6jnm_A, 2gli_A, 7eyi_G, 4m9v_C, 8h9h_G, 7y3m_I, 6wmi_A, 2jpa_A, 6e94_A, 5und_A, 5yj3_D, 3q5f_A |
| Binding Motifs: | M0534_1.02 yCAGGGGc MA0366.1 AGGGG |
| Publications: | Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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