Transcription Factor
| Accessions: | T000626_1.02 (CISBP 1.02), Q8VYM0 (JASPAR 2024), T09778 (AthalianaCistrome v4_May2016) |
| Names: | ATERF15, T000626_1.02;, EREBP-15, ERF93_ARATH, Ethylene-responsive element-binding factor 15, Ethylene-responsive transcription factor 15, AT2G31230, ERF15, T09778; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:AP2, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 243 |
| Pfam Domains: | 86-134 AP2 domain |
| Sequence: (in bold interface residues) | 1 MEYSQSSMYSSPSSWSSSQESLLWNESCFLDQSSEPQAFFCPNYDYSDDFFSFESPEMMI 60 61 KEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAE 120 121 EAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNRPR 180 181 GKKRSSSSSSSSSNSSSCSSSSSTSSTSRSSSKQSVVKQESGTLVVFEDLGAEYLEQLLM 240 241 SSC |
| Interface Residues: | 90, 92, 93, 94, 98, 100, 102, 105, 110, 112 |
| 3D-footprint Homologues: | 1gcc_A, 5wx9_A, 7wq5_A, 7et4_D |
| Binding Motifs: | M0017_1.02 cGsCGGCc M0029 / MA1231.1 cdccdcMGCCGCCry M0014 mrcyryhwymGCCGCCry MA1231.2 yytymGCCGCCdyy MA1231.3 mGCCGCCd |
| Binding Sites: | MA1231.3.5 MA1231.3.8 MA1231.3.19 / MA1231.3.20 MA1231.3.17 MA1231.1.1 MA1231.1.10 MA1231.1.11 MA1231.1.12 MA1231.1.13 MA1231.1.14 MA1231.1.15 MA1231.1.16 MA1231.1.17 MA1231.1.18 MA1231.1.19 MA1231.1.2 MA1231.1.20 MA1231.1.3 MA1231.1.4 MA1231.1.5 MA1231.1.6 MA1231.1.7 MA1231.1.8 MA1231.1.9 MA1231.2.1 MA1231.2.10 MA1231.2.11 MA1231.2.12 MA1231.2.13 MA1231.2.14 MA1231.2.15 MA1231.2.16 MA1231.2.17 MA1231.2.18 MA1231.2.19 MA1231.2.2 MA1231.2.20 MA1231.2.3 MA1231.2.4 MA1231.2.5 MA1231.2.6 MA1231.2.7 MA1231.2.8 MA1231.2.9 MA1231.3.1 / MA1231.3.14 / MA1231.3.15 / MA1231.3.16 / MA1231.3.18 / MA1231.3.6 / MA1231.3.7 MA1231.3.10 MA1231.3.11 / MA1231.3.12 MA1231.3.13 MA1231.3.2 MA1231.3.3 MA1231.3.4 MA1231.3.9 |
| Publications: | Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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