Transcription Factor
| Accessions: | MYB55 (ArabidopsisPBM 20140210), T20471 (AthalianaCistrome v4_May2016) |
| Names: | MYB55, AT4G01680, T20471; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, AthalianaCistrome v4_May2016 2 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | MYB (R2R3), ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 348 |
| Pfam Domains: | 14-73 Myb-like DNA-binding domain 17-88 Myb-like DNA-binding domain 79-122 Myb-like DNA-binding domain 82-128 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGTFLFIQIHLLFGLQR 60 61 CGKSCRLRWINYLRPDLKRGAFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW 120 121 NSCLKKKLRLRGIDPVTHKLLTEIETGTDDKTKPVEKSQQTYLVETDGSSSTTTCSTNQN 180 181 NNTDHLYTGNFGFQRLSLENGSRIAAGSDLGIWIPQTGRNHHHHVDETIPSAVVLPGSMF 240 241 SSGLTGYRSSNLGLIELENSFSTGPMMTEHQQIQESNYNNSTFFGNGNLNWGLTMEENQN 300 301 PFTISNHSNSSLYSDIKSETNFFGTEATNVGMWPCNQLQPQQHAYGHI |
| Interface Residues: | 14, 61, 62, 63, 64, 65, 66, 67, 68, 70, 71, 72, 113, 114, 117, 118, 121, 122, 123 |
| 3D-footprint Homologues: | 7c4r_A, 1w0t_A, 3osg_A, 1vfc_A, 2kdz_A, 7xur_A, 3zqc_A, 5eyb_B, 1mse_C, 6kks_A, 3ted_A |
| Binding Motifs: | MYB55 yACCTAMCGs MYB55_2 cGKTGGkTGg M0507 wGKTwGKTrrrdwwd M0564 yyycAmCmACCacm |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.