Transcription Factor
Accessions: | T098502_1.02 (CISBP 1.02), P22809 (JASPAR 2024) |
Names: | bap, T098502_1.02;, BAGP_DROME, Homeobox protein bagpipe, Homeobox protein NK-3 |
Organisms: | Drosophila melanogaster |
Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | P22809 |
Notes: | experiment type:PBM, family:Homeodomain |
Length: | 382 |
Pfam Domains: | 176-232 Homeobox domain |
Sequence: (in bold interface residues) | 1 MLNMESAGVSAAMAGLSKSLTTPFSINDILTRSNPETRRMSSVDSEPEPEKLKPSSDRER 60 61 SISKSPPLCCRDLGLYKLTQPKEIQPSARQPSNYLQYYAAAMDNNNHHHQATGTSNSSAA 120 121 DYMQRKLAYFGSTLAAPLDMRRCTSNDSDCDSPPPLSSSPSESPLSHDGSGLSRKKRSRA 180 181 AFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRKQIQQHEA 240 241 ALLGASKRVPVQVLVREDGSTTYAHMAAPGAGHGLDPALINIYRHQLQLAYGGLPLPQMQ 300 301 MPFPYFYPQHKVPQPIPPPTQSSSFVTASSASSSPVPIPIPGAVRPQRTPCPSPNGQMMS 360 361 VESGAESVHSAAEDVDENVEID |
Interface Residues: | 175, 176, 177, 178, 179, 217, 218, 220, 221, 224, 225, 228, 229, 231, 232, 260 |
3D-footprint Homologues: | 4j19_B, 1puf_A, 6a8r_A, 3cmy_A, 3d1n_M, 1fjl_B, 5zfz_A, 2h1k_B, 3lnq_A, 2lkx_A, 1jgg_B, 1nk2_P, 1zq3_P, 6m3d_C, 7q3o_C, 6es3_K, 2ld5_A, 2hdd_A, 5jlw_D, 3rkq_B, 2r5y_A, 4xrs_G, 2hos_A, 4cyc_A, 1b72_A, 5flv_I, 3l1p_A, 1ig7_A, 5zjt_E, 3a01_E, 7psx_B, 1e3o_C, 1au7_A, 7xrc_C, 2xsd_C, 1le8_A, 4qtr_D, 1mnm_C, 1puf_B, 1k61_B, 1o4x_A, 8g87_X, 1le8_B, 1du0_A, 5hod_A |
Binding Motifs: | MA0211.1 TTAAGTR M1095_1.02 ctTAAGTRsyt |
Binding Sites: | MA0211.1.1 MA0211.1.10 MA0211.1.11 MA0211.1.12 / MA0211.1.7 MA0211.1.13 MA0211.1.14 / MA0211.1.18 MA0211.1.15 / MA0211.1.2 MA0211.1.16 MA0211.1.17 MA0211.1.19 MA0211.1.20 MA0211.1.3 MA0211.1.4 MA0211.1.5 MA0211.1.6 / MA0211.1.9 MA0211.1.8 |
Publications: | Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.