Transcription Factor

Accessions: T012476_1.02 (CISBP 1.02), Q9FMB6 (JASPAR 2024), T24580 (AthalianaCistrome v4_May2016)
Names: BIM3, T012476_1.02;, AtbHLH141, Basic helix-loop-helix protein 141, BES1-interacting Myc-like protein 3, bHLH 141, bHLH transcription factor bHLH141, BIM3_ARATH, Transcription factor BIM3, Transcription factor EN 127, AT5G38860, T24580;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: experiment type:PBM, family:bHLH, ecotype:Col-0, experiment type: DAP-seq
Length: 298
Pfam Domains: 35-86 Helix-loop-helix DNA-binding domain
Sequence:
(in bold interface residues)
1 MNSHDIDDQLEADVYSNLPSRNDSSTGRRNRNSCRSKHSETEQRRRSKINERFQSLMDII 60
61 PQNQNDQKRDKASFLLEVIEYIHFLQEKVHMYEDSHQMWYQSPTKLIPWRNSHGSVAEEN 120
121 DHPQIVKSFSSNDKVAASSGFLLDTYNSVNPDIDSAVSTKIPEHSPVSAVSSYLRTEPSL 180
181 QFVQHDFWQPKTSCGTINCFTNELLTSDEKTSASLSTVCSQRVLNTLTEALKSSGVNMSE 240
241 TMISVQLSLRKREDREYSVAAFASEDNGNSIADEEGDSPTETRSFCNDIDHSQKRIRR
Interface Residues: 35, 37, 38, 39, 41, 42, 45, 46, 50, 71
3D-footprint Homologues: 7z5k_B, 1a0a_B, 1an4_A, 7f2f_B, 5gnj_I, 5v0l_A, 7ssa_L, 5i50_B, 6g1l_A, 4h10_A, 7xi3_A, 5nj8_D, 1am9_A, 7d8t_A, 4zpk_A, 7xq5_A, 8osl_P, 2ypa_A, 5nw5_B
Binding Motifs: M0164_1.02 rgCACGTGcy
MA0966.1 rgCACGTGcy
M0174 acgTgmwwstCACGTGmc
MA0966.2 CACGTG
Publications: Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell 120:249-59 (2005). [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.