Transcription Factor

Accessions: P16241 (JASPAR 2024)
Names: CF1-A, CF1A_DROME, Chorion factor 1A, POU domain protein CF1A, Protein drifter, Ventral veins lacking protein
Organisms: Drosophila melanogaster
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: P16241
Length: 427
Pfam Domains: 213-286 Pou domain - N-terminal to homeobox domain
305-361 Homeobox domain
Sequence:
(in bold interface residues)
1 MAATSYMTPPSGDLDMALGGGGYHTSSPRSAADAGEMKYMQHHHHHHAAAAAAAHHQLPS 60
61 SPSPNGQGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTHHLPAAAAVASAADTVKQEMSH 120
121 LSQQTRIQQGMASPHAAWHAPHAGHYAPTGGSPLQYHHAMNGMLHHPAHAVAAAHHQSVA 180
181 PLHHTLRGESPQLHIHHHMGGGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIKLGFTQAD 240
241 VGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIAA 300
301 QGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK 360
361 RMTPPNTLGGDMMDGMPPGHMHHGGYHPHHDMHGSPMGTHSHSHSPPMLSPQNMQSSAVA 420
421 AHQLAAH
Interface Residues: 238, 254, 255, 256, 257, 259, 260, 261, 262, 266, 270, 297, 303, 305, 306, 307, 308, 346, 347, 349, 350, 353, 354, 357, 358, 361
3D-footprint Homologues: 7u0g_M, 3d1n_M, 3l1p_A, 1o4x_A, 1e3o_C, 1au7_A, 7xrc_C, 8g87_X, 2xsd_C, 2d5v_B, 3lnq_A, 6a8r_A, 1puf_A, 1fjl_B, 3cmy_A, 2h1k_B, 5zfz_A, 1ig7_A, 5zjt_E, 2lkx_A, 1nk2_P, 1zq3_P, 1jgg_B, 2ld5_A, 3a01_E, 4xrs_G, 1b72_A, 3rkq_B, 2r5y_A, 1puf_B, 7psx_B, 2hdd_A, 5hod_A, 5jlw_D, 1le8_A, 7q3o_C, 4qtr_D, 1k61_B, 6es3_K, 5flv_I, 1du0_A, 4cyc_A
Binding Motifs: MA0254.1 TAtkMA
Binding Sites: MA0254.1.1
MA0254.1.10
MA0254.1.11
MA0254.1.2
MA0254.1.3
MA0254.1.4
MA0254.1.5
MA0254.1.6
MA0254.1.7
MA0254.1.8
MA0254.1.9
Publications: Bergman C.M, Carlson J.W, Celniker S.E. Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinformatics (Oxford, England) 21:1747-9 (2005). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.