Transcription Factor
Accessions: | P16241 (JASPAR 2024) |
Names: | CF1-A, CF1A_DROME, Chorion factor 1A, POU domain protein CF1A, Protein drifter, Ventral veins lacking protein |
Organisms: | Drosophila melanogaster |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | P16241 |
Length: | 427 |
Pfam Domains: | 213-286 Pou domain - N-terminal to homeobox domain 305-361 Homeobox domain |
Sequence: (in bold interface residues) | 1 MAATSYMTPPSGDLDMALGGGGYHTSSPRSAADAGEMKYMQHHHHHHAAAAAAAHHQLPS 60 61 SPSPNGQGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTHHLPAAAAVASAADTVKQEMSH 120 121 LSQQTRIQQGMASPHAAWHAPHAGHYAPTGGSPLQYHHAMNGMLHHPAHAVAAAHHQSVA 180 181 PLHHTLRGESPQLHIHHHMGGGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIKLGFTQAD 240 241 VGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIAA 300 301 QGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK 360 361 RMTPPNTLGGDMMDGMPPGHMHHGGYHPHHDMHGSPMGTHSHSHSPPMLSPQNMQSSAVA 420 421 AHQLAAH |
Interface Residues: | 238, 254, 255, 256, 257, 259, 260, 261, 262, 266, 270, 297, 303, 305, 306, 307, 308, 346, 347, 349, 350, 353, 354, 357, 358, 361 |
3D-footprint Homologues: | 7u0g_M, 3d1n_M, 3l1p_A, 1o4x_A, 1e3o_C, 1au7_A, 7xrc_C, 8g87_X, 2xsd_C, 2d5v_B, 3lnq_A, 6a8r_A, 1puf_A, 1fjl_B, 3cmy_A, 2h1k_B, 5zfz_A, 1ig7_A, 5zjt_E, 2lkx_A, 1nk2_P, 1zq3_P, 1jgg_B, 2ld5_A, 3a01_E, 4xrs_G, 1b72_A, 3rkq_B, 2r5y_A, 1puf_B, 7psx_B, 2hdd_A, 5hod_A, 5jlw_D, 1le8_A, 7q3o_C, 4qtr_D, 1k61_B, 6es3_K, 5flv_I, 1du0_A, 4cyc_A |
Binding Motifs: | MA0254.1 TAtkMA |
Binding Sites: | MA0254.1.1 MA0254.1.10 MA0254.1.11 MA0254.1.2 MA0254.1.3 MA0254.1.4 MA0254.1.5 MA0254.1.6 MA0254.1.7 MA0254.1.8 MA0254.1.9 |
Publications: | Bergman C.M, Carlson J.W, Celniker S.E. Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinformatics (Oxford, England) 21:1747-9 (2005). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.