Transcription Factor
Accessions: | Q9Y1P6 (JASPAR 2024) |
Names: | GM13131p, Homeobox protein SIX4, Myotonix, Q9Y1P6_DROME, RT01027p, Six4, isoform A, Six4, isoform B |
Organisms: | Drosophila melanogaster |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Length: | 392 |
Pfam Domains: | 303-352 Homeobox domain 316-350 Homeobox KN domain |
Sequence: (in bold interface residues) | 1 MFDKNLDGNNLSVSIGGDLDSTSSGGTSSDHSAVHQDNLSSPMAYGSLFLPNAGYRGNLS 60 61 CKTVLQLDKFAPYEGVEKDHLLERRFQDITNDYDKSPPPTASTTPTHYPSLNSIIFENGS 120 121 SGNLGDLNGNTKTDLCAGLQRSGGGLGGNAGSGGHLISNLTAAHNMSAVSSFPIDAKMLQ 180 181 FSTDQIQCMCEALQQKGDIEKLTTFLCSLPPSEFFKTNESVLRARAMVAYNLGQFHELYN 240 241 LLETHCFSIKYHVDLQNLWFKAHYKEAEKVRGRPLGAVDKYRLRKKYPLPKTIWDGEETV 300 301 YCFKEKSRNALKDCYLTNRYPTPDEKKTLAKKTGLTLTQVSNWFKNRRQRDRTPQQRPDI 360 361 MSVLPVGQLDGNGFPRMFNAPSYYPETIFNGQ |
Interface Residues: | 338, 339, 341, 342, 345, 346, 349, 350, 352, 353 |
3D-footprint Homologues: | 5jlw_D, 2ld5_A, 7xrc_C, 1e3o_C, 1au7_A, 1le8_A, 7q3o_C, 1ig7_A, 2xsd_C, 1puf_A, 1jgg_B, 6a8r_A, 4xrm_B, 3a01_E, 2h1k_B, 1mnm_C, 3rkq_B, 2lkx_A, 1puf_B, 8g87_X, 1k61_B, 6es3_K, 4xrs_G, 3cmy_A, 2hdd_A, 1nk2_P, 7psx_B, 1fjl_B, 5zfz_A, 4cyc_A, 2r5y_A, 1zq3_P, 6fqp_B, 1b72_A, 5flv_I, 3l1p_A, 1o4x_A, 5zjt_E, 4qtr_D, 2d5v_B, 1le8_B, 6fqq_E, 1du0_A, 5hod_A, 3lnq_A, 2hos_A, 6m3d_C |
Binding Motifs: | MA0204.1 TGAyAC |
Binding Sites: | MA0204.1.1 MA0204.1.10 MA0204.1.11 MA0204.1.12 MA0204.1.13 MA0204.1.14 MA0204.1.15 MA0204.1.16 MA0204.1.17 MA0204.1.18 MA0204.1.19 MA0204.1.2 MA0204.1.20 MA0204.1.3 MA0204.1.4 MA0204.1.5 MA0204.1.6 MA0204.1.7 MA0204.1.8 MA0204.1.9 |
Publications: | Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.