Transcription Factor

Accessions: Q700W2 (JASPAR 2024), T07271 (AthalianaCistrome v4_May2016)
Names: SPL9_ARATH, AT2G42200, SPL9, T07271;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:SBP
Length: 375
Pfam Domains: 73-150 SBP domain
Sequence:
(in bold interface residues)
1 MEMGSNSGPGHGPGQAESGGSSTESSSFSGGLMFGQKIYFEDGGGGSGSSSSGGRSNRRV 60
61 RGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSR 120
121 FHQLPEFDLEKRSCRRRLAGHNERRRKPQPASLSVLASRYGRIAPSLYENGDAGMNGSFL 180
181 GNQEIGWPSSRTLDTRVMRRPVSSPSWQINPMNVFSQGSVGGGGTSFSSPEIMDTKLESY 240
241 KGIGDSNCALSLLSNPHQPHDNNNNNNNNNNNNNNTWRASSGFGPMTVTMAQPPPAPSQH 300
301 QYLNPPWVFKDNDNDMSPVLNLGRYTEPDNCQISSGTAMGEFELSDHHHQSRRQYMEDEN 360
361 TRAYDSSSHHTNWSL
Interface Residues: 49, 51, 53, 72, 73, 81, 82, 84, 87, 90, 102, 239, 240, 258, 260
3D-footprint Homologues: 4gnx_Z, 4xzf_A
Binding Motifs: M0732 / MA1322.1 awtGTACkkwy
M0733 wwtTGTACGGA
MA1322.2 twTCCGTACrw
MA1322.3 TCCGTAC
Binding Sites: MA1322.1.2
MA1322.1.1
MA1322.1.10
MA1322.1.11
MA1322.1.12
MA1322.1.13
MA1322.1.14
MA1322.1.15
MA1322.1.16
MA1322.1.17
MA1322.1.18
MA1322.1.19
MA1322.1.20
MA1322.1.3
MA1322.1.4
MA1322.1.5
MA1322.1.6
MA1322.1.7
MA1322.1.8
MA1322.1.9
MA1322.2.1
MA1322.2.10 / MA1322.2.5
MA1322.2.11
MA1322.2.12
MA1322.2.13
MA1322.2.14
MA1322.2.15 / MA1322.2.9
MA1322.2.16
MA1322.2.17
MA1322.2.18
MA1322.2.19
MA1322.2.2
MA1322.2.20
MA1322.2.3
MA1322.2.4
MA1322.2.6
MA1322.2.7
MA1322.2.8
MA1322.3.1 / MA1322.3.19 / MA1322.3.3
MA1322.3.10 / MA1322.3.11 / MA1322.3.12 / MA1322.3.20 / MA1322.3.5 / MA1322.3.6
MA1322.3.13
MA1322.3.14
MA1322.3.15 / MA1322.3.16 / MA1322.3.4 / MA1322.3.8 / MA1322.3.9
MA1322.3.17
MA1322.3.18 / MA1322.3.7
MA1322.3.2
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]
Related annotations: PaperBLAST

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