Transcription Factor

Accessions: SP3_HUMAN (HOCOMOCO 10), Q02447 (JASPAR 2024)
Names: SP3_HUMAN, SPR-2, Transcription factor Sp3
Organisms: Homo sapiens
Libraries: HOCOMOCO 10 1, JASPAR 2024 2
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 781
Pfam Domains: 621-645 Zinc finger, C2H2 type
621-645 C2H2-type zinc finger
637-664 Zinc-finger double domain
651-675 Zinc finger, C2H2 type
651-675 C2H2-type zinc finger
668-690 Zinc-finger double domain
681-703 C2H2-type zinc finger
681-703 Zinc finger, C2H2 type
Sequence:
(in bold interface residues)
1 MTAPEKPVKQEEMAALDVDSGGGGGGGGGHGEYLQQQQQHGNGAVAAAAAAQDTQPSPLA 60
61 LLAATCSKIGPPSPGDDEEEAAAAAGAPAAAGATGDLASAQLGGAPNRWEVLSATPTTIK 120
121 DEAGNLVQIPSAATSSGQYVLPLQNLQNQQIFSVAPGSDSSNGTVSSVQYQVIPQIQSAD 180
181 GQQVQIGFTGSSDNGGINQESSQIQIIPGSNQTLLASGTPSANIQNLIPQTGQVQVQGVA 240
241 IGGSSFPGQTQVVANVPLGLPGNITFVPINSVDLDSLGLSGSSQTMTAGINADGHLINTG 300
301 QAMDSSDNSERTGERVSPDINETNTDTDLFVPTSSSSQLPVTIDSTGILQQNTNSLTTSS 360
361 GQVHSSDLQGNYIQSPVSEETQAQNIQVSTAQPVVQHLQLQESQQPTSQAQIVQGITPQT 420
421 IHGVQASGQNISQQALQNLQLQLNPGTFLIQAQTVTPSGQVTWQTFQVQGVQNLQNLQIQ 480
481 NTAAQQITLTPVQTLTLGQVAAGGAFTSTPVSLSTGQLPNLQTVTVNSIDSAGIQLHPGE 540
541 NADSPADIRIKEEEPDPEEWQLSGDSTLNTNDLTHLRVQVVDEEGDQQHQEGKRLRRVAC 600
601 TCPNCKEGGGRGTNLGKKKQHICHIPGCGKVYGKTSHLRAHLRWHSGERPFVCNWMYCGK 660
661 RFTRSDELQRHRRTHTGEKKFVCPECSKRFMRSDHLAKHIKTHQNKKGIHSSSTVLASVE 720
721 AARDDTLITAGGTTLILANIQQGSVSGIGTVNTSATSNQDILTNTEIPLQLVTVSGNETM 780
781 E
Interface Residues: 609, 611, 612, 613, 614, 616, 617, 620, 633, 634, 635, 636, 637, 639, 640, 642, 643, 646, 662, 663, 664, 665, 666, 667, 669, 670, 671, 674, 691, 692, 693, 694, 695, 696, 697, 698, 699, 702, 722, 723, 725, 747, 750
3D-footprint Homologues: 7eyi_G, 7w1m_H, 5v3j_F, 2i13_A, 6ml4_A, 5yel_A, 1tf3_A, 6jnm_A, 8cuc_F, 7n5w_A, 5ei9_F, 1mey_C, 5kl3_A, 7ysf_A, 5k5i_A, 2kmk_A, 8ssq_A, 5und_A, 2gli_A, 1g2f_F, 5k5l_F, 8ssu_A, 1tf6_A, 4x9j_A, 8gn3_A, 6blw_A, 5kkq_D, 1ubd_C, 6u9q_A, 8h9h_G, 6e94_A, 6wmi_A, 2lt7_A, 7y3m_I, 6a57_A, 2jpa_A, 3uk3_C, 7y3l_A, 7txc_E, 2drp_D, 1f2i_J, 1llm_D, 2wbs_A, 4m9v_C, 5yj3_D
Binding Motifs: MA0746.1 sCCACrCCCmc
MA0746.2 srCCACGCCCmCy
SP3_HUMAN.H10MO.B|M01526 gggrggGGGcGGGGcsrgsg
MA0746.3 rCCACGCCCmC
Publications: Yokoyama KD, Pollock DD. SP transcription factor paralogs and DNA-binding sites coevolve and adaptively converge in mammals and birds. Genome Biol Evol : (2012;4(11):1102-17.). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.