Transcription Factor

Accessions: C0SVS4 (JASPAR 2024)
Names: Myb family transcription factor PHL11, PHLB_ARATH, Protein PHR1-LIKE 11
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: C0SVS4
Length: 280
Pfam Domains: 25-76 Myb-like DNA-binding domain
127-174 MYB-CC type transfactor, LHEQLE motif
Sequence:
(in bold interface residues)
1 MERVNLGGLGYDNGGVMMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGL 60
61 KGLTLYHLKSHLQKYRLGQQQGKKQNRTEQNKENAGSSYVHFDNCSQGGISNDSRFDNHQ 120
121 RQSGNVPFAEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSLPCGNAG 180
181 ETDKGQFSDFNLALSGLVGSDRKNEKAGLVTDISHLNGGDSSQEFRLCGEQEKIETGDAC 240
241 VKPESGFVHFDLNSKSGYDLLNCGKYGIEVKPNVIGDRLQ
Interface Residues: 25, 65, 66, 69, 70, 73, 74
3D-footprint Homologues: 6qec_A, 7d3t_D, 6j5b_C
Binding Motifs: MA1163.1 aaarGAATmTTyyw
MA1163.2 warGAATATTCyww
MA1163.3 rGAATATTCy
Binding Sites: MA1163.1.1
MA1163.1.10
MA1163.1.11
MA1163.1.12
MA1163.1.13
MA1163.1.14
MA1163.1.15
MA1163.1.16
MA1163.1.17
MA1163.1.18
MA1163.1.19
MA1163.1.2
MA1163.1.20
MA1163.1.3
MA1163.1.4
MA1163.1.5
MA1163.1.6
MA1163.1.7
MA1163.1.8
MA1163.1.9
MA1163.2.1
MA1163.2.10
MA1163.2.11
MA1163.2.12
MA1163.2.13
MA1163.2.14
MA1163.2.15
MA1163.2.16
MA1163.2.17
MA1163.2.18
MA1163.2.19
MA1163.2.2
MA1163.2.20
MA1163.2.3
MA1163.2.4
MA1163.2.5
MA1163.2.6
MA1163.2.7
MA1163.2.8
MA1163.2.9
MA1163.3.1
MA1163.3.10
MA1163.3.11
MA1163.3.12
MA1163.3.13
MA1163.3.14
MA1163.3.15
MA1163.3.16
MA1163.3.17
MA1163.3.18
MA1163.3.19
MA1163.3.2
MA1163.3.20
MA1163.3.3
MA1163.3.4
MA1163.3.5 / MA1163.3.8
MA1163.3.6 / MA1163.3.7
MA1163.3.9
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.