Transcription Factor

						

			
Accessions: TGA1a (Athamap 20091028), P14232 (JASPAR 2024)

			
Names: TGA1a, ASF-1 protein, TGA1A_TOBAC, TGACG-sequence-specific DNA-binding protein TGA-1A
Organisms: Nicotiana tabacum, Nicotiana sp.
Libraries: Athamap 20091028 1, JASPAR 2024 2
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009).  [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 359
Pfam Domains:    72-117 Basic region leucine zipper
   74-110 bZIP transcription factor
  159-236 Seed dormancy control
Sequence: 
(in bold interface residues)		   1 MGICDPIHQLGMWDDFNSSFPSTSATMILEVDKCLEDQIPIMEKRLDNETEDTSHGTVGT   60
  61 SNRYEPETSKPVEKVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQLEQELERARKQ  120
 121 GMCVGGGVDASQLSYSGTASSGTAVFDMEYGHWVEEQTRQTNDLRIALHSQIGEAELRII  180
 181 VDGYLNHYFDLFRMKATAAKADVLYIMSGMWKTSAERFFMWIGGFRPSELLKVLTPHLEL  240
 241 LTEQQLREVCNLTQSCQQAEDALSQGMVKLHQILAEAVAAGRLGEGNYTLPQMGPAIEKL  300
 301 EDLVRFVNQADHLRQETLQQMSRILNTCQAAQGLLALGEYFERLRVLSSQWATRLREPT
Interface Residues: 82, 83, 85, 86, 89, 90
3D-footprint Homologues: 1dh3_C, 2dgc_A
Binding Motifs: MA0129.1 hACGTCA
TGA1a shSACGTsws
Binding Sites: MA0129.1.1
MA0129.1.10
MA0129.1.11
MA0129.1.12
MA0129.1.13
MA0129.1.14
MA0129.1.15
MA0129.1.2
MA0129.1.3
MA0129.1.4
MA0129.1.5
MA0129.1.6
MA0129.1.7 / MA0129.1.8
MA0129.1.9
			
Publications: Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed]


Niu X., Renshaw-Gegg L., Miller L., Guiltinan M. J. Bipartite determinants of DNA-binding specificity of plant basic leucine zipper proteins.. Plant Mol. Biol. 41:1-13 (1999). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.