Transcription Factor
| Accessions: | sna (DrosophilaTF 1.1), P08044 (JASPAR 2024) |
| Names: | SNAI_DROME |
| Organisms: | Drosophila melanogaster |
| Libraries: | DrosophilaTF 1.1 1, JASPAR 2024 2 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | P08044 |
| Length: | 390 |
| Pfam Domains: | 245-269 C2H2-type zinc finger 279-302 C2H2-type zinc finger 280-302 C2H2-type zinc finger 280-302 Zinc finger, C2H2 type 294-317 Zinc-finger double domain 307-324 C2H2-type zinc finger 307-328 C2H2-type zinc finger 307-328 Zinc finger, C2H2 type 321-344 Zinc-finger double domain 334-356 Zinc finger, C2H2 type 334-356 C2H2-type zinc finger 334-356 C2H2-type zinc finger 348-373 Zinc-finger double domain 362-380 C2H2-type zinc finger 362-385 Zinc finger, C2H2 type 362-385 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MAANYKSCPLKKRPIVFVEERLPQTEALALTKDSQFAQDQPQDLSLKRGRDEETQDYQQP 60 61 EPKRDYVLNLSKTPERNSSSSSNSCLLSPPVEAQDYLPTEIHMRGLTAGTTGYTTATPTT 120 121 INPFQSAFVMAAGCNPISALWSSYQPHLAAFPSPASSMASPQSVYSYQQMTPPSSPGSDL 180 181 ETGSEPEDLSVRNDIPLPALFHLFDEAKSSSSGASVSSSSGYSYTPAMSASSASVAANHA 240 241 KNYRFKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMHIR 300 301 THTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVK 360 361 KYACQVCHKSFSRMSLLNKHSSSNCTITIA |
| Interface Residues: | 232, 234, 235, 255, 256, 258, 259, 262, 290, 291, 292, 293, 294, 296, 297, 299, 300, 303, 316, 317, 318, 319, 320, 322, 323, 324, 344, 345, 346, 347, 348, 349, 350, 351, 352, 355, 372, 373, 374, 375, 376, 377, 378, 379, 383 |
| 3D-footprint Homologues: | 2i13_A, 7w1m_H, 5v3j_F, 1ubd_C, 6jnm_A, 8ssu_A, 6ml4_A, 5kkq_D, 5ei9_F, 5kl3_A, 8ssq_A, 7eyi_G, 7ysf_A, 6wmi_A, 6a57_A, 2jpa_A, 8cuc_F, 7y3l_A, 7n5w_A, 3uk3_C, 1tf3_A, 2gli_A, 1g2f_F, 1tf6_A, 4x9j_A, 1llm_D, 6blw_A, 2wbs_A, 6u9q_A, 1mey_C, 1f2i_J, 5k5i_A, 2kmk_A, 5und_A, 4m9v_C, 8h9h_G, 2lt7_A, 7y3m_I, 6e94_A, 5k5l_F, 8gn3_A, 5yel_A, 7txc_E, 2drp_D, 5yj3_D |
| Binding Motifs: | sna vwrACAGGTGymc MA0086.1 CAGGTG MA0086.2 kbrACAGGTGyaa MA0086.3 rACAGGTGy |
| Binding Sites: | sna_1 sna_10 sna_11 sna_12 sna_13 sna_14 sna_15 sna_16 sna_17 sna_18 sna_19 sna_2 sna_20 sna_21 sna_22 sna_23 sna_24 sna_25 sna_26 sna_27 sna_28 sna_29 sna_3 sna_30 sna_31 sna_32 sna_33 sna_34 sna_35 sna_36 sna_37 sna_38 sna_39 sna_4 sna_40 sna_5 sna_6 sna_7 sna_8 sna_9 MA0086.1.1 MA0086.1.10 MA0086.1.11 MA0086.1.12 MA0086.1.13 MA0086.1.14 MA0086.1.15 MA0086.1.16 MA0086.1.17 MA0086.1.18 MA0086.1.19 MA0086.1.2 MA0086.1.20 MA0086.1.3 MA0086.1.4 MA0086.1.5 MA0086.1.6 MA0086.1.7 MA0086.1.8 MA0086.1.9 |
| Publications: | Mauhin V., Lutz Y., Dennefeld C., Alberga A. Definition of the DNA-binding site repertoire for the Drosophila transcription factor SNAIL. Nucleic Acids Res. 21:3951-3957 (1993). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.