Transcription Factor
| Accessions: | MYB46 (ArabidopsisPBM 20140210), Q9LXV2 (JASPAR 2024) |
| Names: | ATMYB46, Myb-related protein 46, MYB46_ARATH, Transcription factor MYB46 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | MYB (R2R3) |
| Length: | 280 |
| Pfam Domains: | 20-67 Myb-like DNA-binding domain 23-82 Myb-like DNA-binding domain 73-116 Myb-like DNA-binding domain 76-124 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MRKPEVAIAASTHQVKKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCR 60 61 LRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKK 120 121 RLKKMSDTSNLINNSSSSPNTASDSSSNSASSLDIKDIIGSFMSLQEQGFVNPSLTHIQT 180 181 NNPFPTGNMISHPCNDDFTPYVDGIYGVNAGVQGELYFPPLECEEGDWYNANINNHLDEL 240 241 NTNGSGNAPEGMRPVEEFWDLDQLMNTEVPSFYFNFKQSI |
| Interface Residues: | 20, 55, 56, 57, 58, 60, 61, 64, 65, 66, 107, 108, 111, 112, 115, 116, 117 |
| 3D-footprint Homologues: | 3osg_A, 2kdz_A, 7xur_A, 3zqc_A, 1mse_C, 5eyb_B, 6kks_A |
| Binding Motifs: | MYB46 aGkTAGGTrr MYB46_2 yyAACcAcCr MA1040.1 GkTAGGTr |
| Publications: | Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.