Transcription Factor
| Accessions: | Q94A57 (JASPAR 2024) |
| Names: | Myb family transcription factor PHL2, PHL2_ARATH, Protein PHR1-LIKE 2 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 295 |
| Pfam Domains: | 43-94 Myb-like DNA-binding domain 137-186 MYB-CC type transfactor, LHEQLE motif |
| Sequence: (in bold interface residues) | 1 MYSAIRSLPLDGGHVGGDYHGPLDGTNLPGDACLVLTTDPKPRLRWTTELHERFVDAVTQ 60 61 LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQAGKESTENSKDASCVGESQDTG 120 121 SSSTSSMRMAQQEQNEGYQVTEALRAQMEVQRRLHDQLEVQRRLQLRIEAQGKYLQSILE 180 181 KACKAFDEQAATFAGLEAAREELSELAIKVSNSSQGTSVPYFDATKMMMMPSLSELAVAI 240 241 DNKNNITTNCSVESSLTSITHGSSISAASMKKRQRGDNLGVGYESGWIMPSSTIG |
| Interface Residues: | 43, 83, 84, 87, 88, 91, 92 |
| 3D-footprint Homologues: | 7d3t_D, 6j5b_C, 6qec_A |
| Binding Motifs: | MA1388.1 rGAATmTd MA1388.2 rGAATmT |
| Binding Sites: | MA1388.1.1 MA1388.1.10 MA1388.1.11 MA1388.1.12 MA1388.1.13 MA1388.1.14 MA1388.1.15 MA1388.1.16 MA1388.1.17 MA1388.1.18 MA1388.1.19 MA1388.1.2 MA1388.1.20 MA1388.1.3 MA1388.1.4 MA1388.1.5 MA1388.1.6 MA1388.1.7 MA1388.1.8 MA1388.1.9 MA1388.2.17 MA1388.2.11 MA1388.2.1 MA1388.2.10 MA1388.2.12 MA1388.2.13 MA1388.2.14 MA1388.2.15 MA1388.2.16 MA1388.2.18 MA1388.2.19 MA1388.2.2 MA1388.2.20 MA1388.2.3 MA1388.2.4 MA1388.2.5 MA1388.2.6 MA1388.2.7 MA1388.2.8 MA1388.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.