Transcription Factor

Accessions: 7ce1_D (3D-footprint 20231221)
Names: A0A2I4PGE9_RHIRD, Fragment, LacI-type transcription factor
Organisms: Agrobacterium tumefaciens A6
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: A0A2I4
Length: 327
Pfam Domains: 4-49 Bacterial regulatory proteins, lacI family
75-310 Periplasmic binding proteins and sugar binding domain of LacI family
171-317 Periplasmic binding protein-like domain
Sequence:
(in bold interface residues)
1 ERPTLKTIAYMTGLGITTVSRALKDAPDIGAETKERVRLIAQQIGYQPNRAGVRLRTGKT 60
61 NVIALVLSVDEELMGFTSQMVFGITEVLATTQYHLVVTPHTHAKDSMVPIRYILETGSAD 120
121 GVIISKIEPNDPRVRFMTERKMPFVTHGRSDMGIEHAYHDFDNEAYAYEAVERLAQCGRK 180
181 RIAIIVPPSRFAFHDHARKGFTRGIRDFGVSEFPLDAITIETPLDKIRDFGKRLMQSDDR 240
241 PDGIVSISGSSTIALVAGFEAAGVRIGKDIDIVSKQSAEFLNWIQPQIHTVNEDIKLAGR 300
301 ELAKALLARINGAPPETLQSVSRPVWS
Interface Residues: 5, 6, 15, 16, 17, 18, 20, 21, 27, 28, 29, 52, 55, 56, 57
3D-footprint Homologues: 1efa_B, 3oqm_C, 7ce1_D, 1l1m_B, 1zvv_A, 1jft_A
Binding Motifs: 7ce1_CD CTGCAACGTTGCAG
7ce1_D CGTTGCAG
Binding Sites: 7ce1_c / 7ce1_d
Publications: Ye F, Wang C, Fu Q, Yan XF, Bharath SR, Casanas A, Wang M, Song H, Zhang LH, Gao YG. Structural basis of a novel repressor, SghR, controlling Agrobacterium infection by cross-talking to plants. J Biol Chem 295:12290-12304 (2020). [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.